Silene latifolia (white campion): 141605716
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Entry
141605716 CDS
T11116
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
slaf03015
mRNA surveillance pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141605716
09122 Translation
03013 Nucleocytoplasmic transport
141605716
03015 mRNA surveillance pathway
141605716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141605716
03041 Spliceosome [BR:
slaf03041
]
141605716
03009 Ribosome biogenesis [BR:
slaf03009
]
141605716
03012 Translation factors [BR:
slaf03012
]
141605716
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141605716
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141605716
mRNA cycle factors
Stress granule specific factors
141605716
Spliceosome [BR:
slaf03041
]
Complex C
Other components
EJC/TREX
141605716
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
90S particles
Helicases
141605716
Translation factors [BR:
slaf03012
]
Eukaryotic type
Initiation factors
eIF-4
141605716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
141605716
NCBI-ProteinID:
XP_074280694
LinkDB
All DBs
Position
10:88281724..88288458
Genome browser
AA seq
401 aa
AA seq
DB search
MATGSNRGRRPDDEKLQFETTEGIEPITSFDSMGIKNDLLRGIYGFGFEKPSAIQQRAVM
PIIQGRDVIAQAQSGTGKTSMISLAVCQIVDISSREVQALILSPTRELASQTEKVIMAIG
QYMSIEAYACIGGKSVGEDIRKLESGVHVVSGTPGRVCDMIKRRTLRTRQIKLLILDESD
EMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITNKFMTDPVKILVKRDELTLEG
IKQFFVAVEREDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGD
MPQKERDAIMGEFRNAHTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR
FGRKGVAINFVKNDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggggtcgaacagaggacggcgtccggatgacgagaagctgcagttcgagaca
acagaaggaatagagccaataacgagtttcgatagtatgggtattaagaacgatctatta
cgaggtatttacggtttcgggttcgaaaaaccctctgctattcaacagcgcgctgttatg
cccatcattcagggccgcgacgttattgcccaagctcagtctggtactggcaagacctct
atgatttcccttgctgtttgccagattgtcgacatctcttctcgcgaggtccaagctttg
attttgtcccctactcgagagctggcttctcaaacagaaaaggtgataatggccattggt
caatacatgagtatcgaagcatacgcatgcattggaggcaagagtgtgggtgaggatatt
agaaaattggagagtggagttcacgttgtttcaggaactcctggtagagtttgtgatatg
atcaaaaggagaactcttcgaacaagacaaataaagcttttaattcttgatgaatctgat
gagatgttgagcagaggtttcaaggatcaaatttatgatgtttatagataccttcctcca
gagcttcaggttgtgctgatttctgccacactccccaatgaaattctggagataaccaac
aaatttatgacagatcccgttaaaatccttgtaaaacgtgatgaattgactctagagggt
ataaagcagttctttgttgcggtggagagggaagattggaaatttgataccctctgcgat
ctttatgatactcttacaattactcaagcagtcatcttttgcaacacaaaacgcaaggtg
gattggctgactgaaaaaatgcgcagtaacaatttcactgtgtcatctatgcatggtgat
atgccccaaaaagagagagatgctattatgggagagttccgtaatgcacatacccgtgtt
ttgatcacaacagatgtttgggctcgagggatcgatgttcaacaggtttcactggtaatc
aactacgatctacccaataatcgagaactttatattcataggattggtcgatcaggtcgt
tttggacgcaagggtgttgctataaactttgtcaagaatgatgacatcaagattctaaga
gatattgagcaatattacagtacccaaatcgacgaaatgccgatgaatgttgctgatttg
atatga
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