Silene latifolia (white campion): 141605751
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Entry
141605751 CDS
T11116
Name
(RefSeq) THO complex subunit 6
KO
K13175
THO complex subunit 6
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141605751
09122 Translation
03013 Nucleocytoplasmic transport
141605751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141605751
03041 Spliceosome [BR:
slaf03041
]
141605751
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
141605751
Spliceosome [BR:
slaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141605751
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR41
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_WDR3_2nd
EIF3I
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Ge1_WD40
Beta-prop_ACSF4
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
DUF3152
Beta-prop_IP5PC_F
DSE1_N
Motif
Other DBs
NCBI-GeneID:
141605751
NCBI-ProteinID:
XP_074280737
LinkDB
All DBs
Position
10:complement(94457697..94469004)
Genome browser
AA seq
370 aa
AA seq
DB search
MLMDVRNWDEDAYRESILNDRESHCRTVFRSIFAPSLNPNTNPDIIVTASSDGTVASYSL
SSAISHLEKSCTNPTPRQVLEAEPRWFLQAHQGPAYDVKFYGEGPDSLLLSCGDDGQVRG
WKWKELEESETPIHEQGLHVNSVVQFMNPQHRGPWSAMSPVPENNAIAVDSKRGSVFVAA
GDSCAYCWDVETSKVKMVYKGHSDYLHCIFARRSSNQIITGSEDGTARIWDCGSGKCIQV
IHPARDNSLKEVSSVSCIALDASESWLACGSGHNLFVWNLLASAQISRISAPTSCQDIVF
DDNNILLVGASPILSRMDMSGKILSQIKCAPESAFSVSLHQPGIVAVAGYGGLVDVISQF
GSHLCTFHCT
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgttaatggacgttcgaaactgggatgaagacgcatacagagagagtatccttaatgat
agagaatcccattgccgtactgttttccgatcaatcttcgccccttccttaaaccctaac
actaaccccgacatcatcgttaccgcctctagcgacggcaccgtcgcctcctactctctc
tcctccgccatctcccacctcgaaaagagctgcacaaatcctactcctcgacaagtgtta
gaagctgaacctaggtggtttttgcaagcacaccaaggtcctgcatatgatgtgaagttt
tatggcgaggggccggattccttgttgcttagttgtggagatgatggccaggttcgaggg
tggaagtggaaggagcttgaagaatctgagacgccaatacatgaacaaggtctgcatgta
aattcagttgttcagttcatgaatcctcagcacaggggaccttggtctgccatgtctcca
gttcccgagaataatgcaattgccgttgactccaagagaggatcagtatttgtggctgct
ggggactcttgtgcatactgttgggatgtggagacaagtaaagttaagatggtttataag
ggccattcagactatctgcattgtatttttgctcgcagatccagcaatcagatcataact
ggttcagaagacggaacagcaagaatatgggactgcgggagtggaaagtgcattcaggtt
atacatcctgctcgagataacagtctaaaggaagtctccagtgttagctgcattgctctt
gatgcaagtgaaagttggctggcatgtggtagtgggcataatttgtttgtgtggaatcta
ctggcttcagcacaaatttcgagaatctcagctcccacatcttgccaagatatagttttt
gatgacaataatattttattagttggagcttcaccaatacttagtcgaatggacatgagt
ggcaagattctatctcaaataaaatgtgcccctgagtcagcattttctgtttcattgcat
cagccgggtattgttgcagttgcaggatatggaggtctagttgacgtgatatcacagttt
ggtagccacttgtgcacatttcattgcacataa
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integrated database retrieval system
