Silene latifolia (white campion): 141606132
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Entry
141606132 CDS
T11116
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141606132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141606132
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141606132
Spliceosome [BR:
slaf03041
]
Complex C
Other components
Step II factors
141606132
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
nSTAND_NTPase5
ABC_tran
AAA_16
TsaE
Sigma54_activ_2
Flavi_DEAD
PhoH
T2SSE
NB-ARC
DUF5621
Motif
Other DBs
NCBI-GeneID:
141606132
NCBI-ProteinID:
XP_074281252
LinkDB
All DBs
Position
10:complement(143642082..143644695)
Genome browser
AA seq
844 aa
AA seq
DB search
MTMMQVRSYRHNERPLKRMNSADMFEIKQLIASGVLSIKDLPSFDERLADETVYQQEDIE
EELEIELNDEEPFFLRGQTRFAADMSPIRISKNPEGCLSRAAALAPALSKERREIRQQQE
RAILDSIPKDLNRPWEDPMPETGDRRLAHELRGVGLSAHDMPEWKKEAYGNAPTFGQKSR
LSIQEQRESLPIYKLKKSLVQAVHDNQVLVVIGETGSGKTTQMTQYLAEAGYTTKGKIGC
TQPRRVAATSVAKRVADEFGCRVGEEVGYAIRFEDCTSCDTVIKYMTDGMLLREILIDEN
LTQYSVIMLDEAHERTIHTDVLFGLLKQLVRRRPDLRLIVTSATLNAEKFSEFFYNCQIF
TIPGRTFPVEILYVKEAETDYCDAALKTVLQIHLLEAEGDILLFLTGQEEIDYACEYLYQ
KMKALGNNQVPELIILPAYGALPSDMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYV
VDPGFAKQNVYNPKLGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLFTESAFRNEMAP
TPIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPAPQALISAMEQLYSLGALDEEGLLT
KLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTVISMIQSGNIFYRPREKQSQADQKKAK
FFQPEGDHLMLLTVYKSWKATNFSKSWCFENFIQYRSLQKAQDIRKQLLTIMAKYGLDVV
SAGKNFTKIRMAICAGFFFHVAKKDPLEGYRTLIENQSVYIHPSSALFHRQPEWVIYHEL
VMTTREYMREVTVVDPKWLVELAPRCFKVADPMKMSKRKRQERIEPLHDRFNEPNSWRLS
KRRG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgatgcaggtaagatcatataggcataatgagagaccattgaagcgtatgaat
tcagcagacatgttcgaaatcaagcagctaattgcttctggtgtactgagtatcaaggat
cttccgagtttcgacgaaagactagctgacgaaacggtttatcaacaagaagacattgaa
gaagaacttgagattgagttaaatgacgaggaacctttctttcttcgaggccaaactcgt
ttcgctgcagacatgtctcctatcagaatttccaagaatcccgagggttgtttgagtcgc
gctgctgcgttggcgcctgctttgagcaaagaaaggcgagaaatcagacagcaacaggag
agagcgattcttgattctattccgaaagatcttaatcgaccatgggaagatccaatgcca
gaaaccggagacaggcgtcttgcacacgagttgcgaggcgttggtttgtctgcacatgac
atgcctgaatggaagaaagaagcgtatggtaatgctccgacgtttgggcagaaatcgagg
ttatctatccaagaacagcgagaaagtttaccgatttataaactgaagaaatcgttagtg
caggctgtacatgataatcaggttctggttgtgattggtgagactggttccgggaaaaca
actcaaatgactcagtatcttgcagaagcgggttatactaccaagggtaaaatcgggtgt
actcagcctcgtagagttgctgctacgtctgttgcgaagagggtggcagatgagtttggt
tgtcgggttggtgaggaagttgggtatgctattcgctttgaagactgtacgagttgtgac
actgtgattaagtacatgacagatggtatgctgcttagggagattcttattgacgagaat
cttacgcagtattctgttataatgctcgatgaagcgcatgagaggactatacacactgat
gtcttgtttgggcttttaaaacagcttgttagacggagacctgatcttcgtttaattgtg
acttctgccacgttgaatgcggagaaattttctgaatttttctataattgtcaaatattt
acgatccctggtagaacatttcctgtagagattttgtatgtcaaggaggcggagactgat
tactgtgacgcggctttgaagactgtattgcaaatccacttgttagaagctgaaggtgat
attcttctgtttttaaccggacaagaggaaatcgattatgcatgtgagtatctttatcag
aaaatgaaagcccttggtaataatcaagtacctgaactgattattcttcctgcttacggc
gcgcttcctagtgatatgcaatctaggatatttgatcctgctcctcctgggaaacgaaaa
gtcgttgtggctactaatattgctgaagcttccctaacaattgatgggatattttatgta
gttgatcccgggtttgctaagcaaaatgtgtataacccgaaattaggtcttgattctctg
gtgataactccgatttctcaagcatcagccaagcaacgtgcaggccgtgctggtcgtact
ggtccagggaaatgctatcgcctttttactgagagtgccttccgaaatgaaatggccccc
accccaattcctgagattcagagaattaatcttggaatgactacactgactatgaaggct
atgggaattaatgatctgttgtcgttcgattttatggacccacctgcaccacaagccctt
atttctgctatggagcagttgtatagcttgggggccttggatgaagagggtcttttgacc
aaattgggtaggaagatggccgaatttcccttggagccgccactgtcaaaaatgcttttg
gccagtgtcgaccttggatgcagtgacgagattctgaccgtcatttcaatgattcagtcg
ggaaatatattctacaggccgagggaaaagcaatcacaggctgaccaaaagaaggccaaa
ttcttccagccagaaggcgatcaccttatgttgcttactgtgtataagtcctggaaagca
accaacttctcgaaatcatggtgctttgaaaattttattcagtatcggtcgttgcagaag
gcacaagatatcaggaaacaactcctgactattatggcgaagtatggattggatgttgtg
agtgctgggaagaattttacgaaaataaggatggcgatttgtgcagggtttttctttcat
gtagctaagaaggacccactagagggataccgaactttgattgagaatcagtctgtttac
attcatccgagtagtgcattgtttcatagacaaccagagtgggtcatctatcatgaactt
gtgatgacaacgagagagtatatgcgcgaggtgactgttgttgatccaaagtggcttgtt
gaattagctccaagatgttttaaagtggcagatccgatgaaaatgagcaagcgcaaacgt
caagaacgtattgagccacttcatgacaggtttaatgagcctaactcttggcgccttagc
aaaaggcgtggctaa
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