Silene latifolia (white campion): 141606374
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Entry
141606374 CDS
T11116
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
141606374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141606374
03036 Chromosome and associated proteins [BR:
slaf03036
]
141606374
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
141606374
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
141606374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR55
Beta-prop_WDR3_2nd
Beta-prop_Aladin
Beta-prop_WDR41
ANAPC4_WD40
EIF3I
Beta-prop_WDR36-Utp21_2nd
MIOS_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
141606374
NCBI-ProteinID:
XP_074281570
LinkDB
All DBs
Position
10:150492562..150501716
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AA seq
342 aa
AA seq
DB search
MENNNSTSDEPSLITYDSPYPIYAMSFSGDTQLIAVGSFIEDYNNRIDILSFNDEALTLT
QNPNYSFSHPYPPTKLMFRPSNDAVSSNSPLLATSADFLRLYSVKNDVVEQVSVLNNSKS
SEFCAPLTSFDWNDVVPQRIGTSSIDTTCTVWDVEKGVVETQLIAHDKEVYDIAWGEAGV
FASVSADGSVRIFDLRDKEHSTIVYESPEPDTPLLRLAWNKRDLRYMATVLMDSNKVVVL
DIRSPTMPVAELERHSGGVNAIAWAPQSGSHICSGGDDGQALIWEVPSVTGVGGGGGGGG
GVGVDPLLVYSAGSEINQLQWSVAQPDWIGAAFSNKLQLLRV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaacaattcaacctccgatgaaccaagcctcataacatacgattccccatat
ccaatctacgcaatgtcattctccggcgacactcaattgatcgccgtcggaagtttcatc
gaagattacaacaatcgcatcgatatcttatcattcaacgacgaagccctaaccctaact
caaaaccctaattattccttctcacatccttaccctccgacgaaactcatgtttcgaccg
tcaaacgacgccgtttcgagcaattcccctcttttggcaacctccgcggatttcttacga
ttatattcggttaaaaacgacgtcgttgagcaggtttcggtgttaaataattcaaaatcg
agcgaattctgcgcgccattgacttcgtttgactggaacgacgtcgttccgcagagaatt
gggactagtagtattgatacgacctgtacagtgtgggatgtggagaaaggtgtggtggag
acacagttgattgcgcatgataaggaggtttacgacattgcgtggggagaagccggagtt
ttcgcttcggtttcggcggatgggagtgttaggatctttgatttgcgtgataaggagcat
tctactattgtttatgagtcgccggagccggatacgccattgttgaggttggcgtggaat
aagagggatttgaggtatatggcgactgttttgatggatagtaataaggttgtggtgttg
gatattcggtctccgacaatgccagtggcggaattagagaggcatagcggaggtgttaat
gccatagcgtgggcccctcagagtggaagtcatatttgttctggtggagatgatggacag
gcgcttatatgggaggtgcctagtgtgactggggttggtggcggtggtggtggtggtggc
ggtgttggggttgatcctttgttggtgtactcggctggttcggagattaatcagttgcag
tggtcggttgctcagccggattggattggggcggcgttttctaataagctgcagttgctg
agggtttga
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