Silene latifolia (white campion): 141607879
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Entry
141607879 CDS
T11116
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03030
DNA replication
slaf03420
Nucleotide excision repair
slaf03430
Mismatch repair
slaf03440
Homologous recombination
slaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141607879
03420 Nucleotide excision repair
141607879
03430 Mismatch repair
141607879
03440 Homologous recombination
141607879
03460 Fanconi anemia pathway
141607879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slaf03000
]
141607879
03032 DNA replication proteins [BR:
slaf03032
]
141607879
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141607879
Transcription factors [BR:
slaf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
141607879
DNA replication proteins [BR:
slaf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
141607879
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
141607879
MMR (mismatch excision repair)
141607879
DSBR (double strand breaks repair)
HR (homologous recombination)
141607879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
RADX
OB_MEIOB_N
DUF223
BRCA-2_OB1
CDC24_OB3
DUF936
RMI1_C
Motif
Other DBs
NCBI-GeneID:
141607879
NCBI-ProteinID:
XP_074283331
LinkDB
All DBs
Position
1:complement(93895471..93901878)
Genome browser
AA seq
872 aa
AA seq
DB search
MATINLTEGAIMTMCNNDCEVNPVLQVTELRLVNTQNAMSTVERYRLIISDGVYSQQAML
ATQHNALVKSGCLQQGSIIQILQFVCNTIQSRRIIIVVELEIVQEAYPLIGEPKQYLPPS
PNDDIASPSVGQAGVVPGYAQHRTPYATGPGPTYRQSETGSLQQPKLEYGAPLNSYGRPS
AINSDTGNYAINKGPPMYPKSDLPAGLTGSATGGSSYVGFNNARTDTSRAPPSTYARHQQ
PAYQQQPSMYMNRGPVAKNEAPSKIVPIAALNPYQGRWTIKARVTAKGELRHYNNPRGDG
KVFSFDLLDSEGGEIRVTCFNAVVDQFYDMIEVGKVYLISKGTLKPAQKNFNHLSNDHEL
FLDTTSLVQPCYDDDGGIPRLQFHFRPISDIEGIDNQGVIDVIGVVTSISPTTSIMRKNG
TETQKRSLQLKDMSGRSVELTMWGNFCNSEGQKLQNLCDTGNFPVLAVKAARVSDFNGKV
LGTISSSQLFIEPDNPEAEELKVWFDQKGKNLPSVSISREMTSMGRTEARKTISQIKDEK
LGTSEKPDWITVCATLSFIKMDNFCYTACPNLIGDRQCNKKVTNNGDGKWRCDRCDQSVD
ECDYRYILQVQIQDHTGSTWVTAFQECAEELLGMSAKDLFDLKYNSQDDDKFQEAIRATL
FHKYIFKLKVKEETFSDEQRVKSTVVKAEKVNFVVESRSLFDSIHRVKSENMMSPSIGTK
RSGFNQTGMHPNSTVRETGGYGLNKNTTQYGNQNSGGYGHNTNTTQYGNQYSGGYGGNSA
SGMHATCTSCGGTGHSSINCPSIINGPSQPSGPVVNQAVLGGSNTARCFKCQNVGHFAKD
CPGLNNVPPAYGGGSGVSGRYGGAQRQHIGGY
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaatcaatctaaccgaaggagcaatcatgacgatgtgcaacaacgattgcgaa
gtcaacccggtgttacaggtgactgaattacgcctcgttaatacccaaaacgcaatgtct
actgtcgaaaggtatcgattgataatctccgatggcgtttactcgcagcaagctatgctc
gctacacaacacaatgctttggttaaaagtggttgcttgcagcaaggatctatcattcag
attcttcagtttgtttgtaatactattcagtctcgcaggatcatcattgtcgtggagctg
gaaatagtacaagaggcataccccctaataggagaaccaaagcaatatttacctccaagt
cctaatgatgatatagcgtcaccctctgtaggccaagcaggcgttgttcctgggtatgct
caacacaggacaccttatgcaactggcccaggccccacttatcgtcagagtgaaacaggg
agcttacagcaacccaaactggagtatggtgctccgttgaactcttatggtaggccctct
gcaatcaattcagacacggggaattatgccataaataaaggacctcccatgtaccctaaa
tcagacttaccagctggccttactggaagtgctactggtggtagttcatatgttggattc
aataatgccagaaccgatacttcacgtgctcctccaagtacttatgcccgacatcaacaa
ccagcatatcagcaacaaccatctatgtacatgaacaggggacccgttgccaagaatgaa
gctccgtctaagatagttccaattgctgctttaaacccttaccaaggtcgatggaccatc
aaagcaagagtcacagcaaagggtgagcttaggcactacaacaatcctcgtggagatggt
aaagtgttttcctttgatcttttggattctgaggggggagaaatccgagttacttgcttt
aatgctgtggtagatcagttttacgacatgattgaggtcggcaaagtgtacctgatatcc
aaaggaacccttaaacctgcgcagaagaattttaatcacctctctaatgatcatgagcta
tttttggacaccacatccttggtgcagccttgttatgatgatgatggcggaattcctagg
ctgcaatttcattttcgtcctatcagtgatattgagggaatagataaccaaggtgttatc
gatgtaattggagtcgttacctcaatcagcccaacgacttcaattatgaggaaaaatgga
actgaaactcagaaaaggagccttcaattgaaggacatgtccggtagaagtgtggaactg
acaatgtggggaaatttctgtaattcagaaggacaaaagttgcaaaatttgtgtgatact
ggtaatttcccagttttggcggttaaggcagctagagtctctgatttcaacgggaaggtg
ttgggaactatttcttcaagccaactctttatagaacctgataatcccgaggctgaggag
ctcaaggtatggtttgaccaaaaagggaaaaacctgccttcagtctctatttcaagagag
atgacaagtatgggtaggactgaagctcgaaagactatatcacagattaaggatgagaag
ctgggaacatctgagaaacctgattggattacagtctgtgccaccctgtcatttataaag
atggataacttctgttacacggcatgtcccaatttaattggcgatcgtcaatgtaataaa
aaggtaacaaacaatggagacgggaagtggcgatgtgatagatgtgatcagtcagttgat
gaatgtgactacaggtatattctccaggttcaaatacaagatcatacaggttcgacgtgg
gtaacagccttccaggaatgtgctgaagagcttttgggcatgtctgccaaagatcttttt
gatttgaaatacaatagtcaagacgacgataaatttcaagaggctattcgagcaaccctc
ttccataaatacatattcaagttaaaggtcaaggaagagactttcagcgatgagcagcga
gttaagtcaactgtagtcaaagccgagaaggttaattttgtcgttgaatccaggtctctc
ttcgattcgatccacagggtcaaatcagagaacatgatgtctcctagtattggtacaaaa
agatctggatttaaccaaactggaatgcaccctaattctacagttagagaaacgggtgga
tatggacttaataaaaacacgacccaatacggaaatcaaaacagtggtggatatggacat
aacacaaatacgacccagtacggaaatcaatacagtggtggatatggagggaacagtgcc
tctggcatgcatgctacctgtaccagctgtggtggtaccggccatagctcgattaattgc
cctagtatcattaatggcccaagtcaaccatcaggaccagttgtgaatcaagcagtatta
ggtgggagcaatactgcacgttgctttaaatgtcaaaatgttggacattttgcaaaagat
tgtccgggactgaataatgtacctccagcttatggaggcggtagtggtgtctcaggtagg
tatggtggtgctcagagacagcacattggaggctactaa
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