Silene latifolia (white campion): 141608110
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Entry
141608110 CDS
T11116
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141608110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141608110
03041 Spliceosome [BR:
slaf03041
]
141608110
03036 Chromosome and associated proteins [BR:
slaf03036
]
141608110
Transcription machinery [BR:
slaf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
141608110
Spliceosome [BR:
slaf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141608110
Complex B
141608110
Complex C
U2 SnRNP specific factors
141608110
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
141608110
TFTC complex
141608110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
141608110
NCBI-ProteinID:
XP_074283563
LinkDB
All DBs
Position
1:100003920..100013554
Genome browser
AA seq
1210 aa
AA seq
DB search
MYLYSLTLQKATGILCAINGNFSGHPKSQELVVARGKVLDLVRPDDSGKLQTLLSVDIFG
AIRSLAHFRLTGSHKDYIVIGSDSGRIVILDYNKEKNSFDKVHQETFGKSGSRRIVPGQY
IAVDPKGRAVMIAAAEKQKLVYVLNRDASARLTISSPLEAHKSHTITYSIVGVDCGFDNP
VFAAIEMDYSEADQDSTGLAAAEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPG
GGDGPSGVLVCAENFVIYKNQGHPDVRALIPRRADLPAERGVLIVSAATHRQKSMFFFLL
QTEYGDIFKVTLEHGNDGVSELIIKYFDTIPVTSSLCVMKSGFLFAASEFGNHGLYQFQA
IGEDPDVESSSARMMELETEDGFQPVFFQPRRLKNLLRVDQVQSLMPIMDMKVFNLFEEE
TPQIFTLCGQGPRSSVRVLRPGLGITEMATSPLPGVPNAVWTVKKNVNDEFDAYIVVSFA
TVTLVLSIGETVEEVNDSGFLDTTPSLAVSLVGDDSLMQVHPSGIRHIREDGRINEWRTP
GKRTIVKVGYNRLQVVIALSGGELIYFAVDMTGQLMEVEKHEMPGDVACLDIAPVPEGRQ
RSRFLAVGSYDNTIRILSLDPDDCMQVLSIQSVFSPPESLLFLEIQASSGGEDGADHAAS
LFLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSITVRGRRAMLCLSSRPWLG
YIYQGHFLLTPLTCGTLEFAASFSSDQCAEGVVAVAAEALKVFTIERLGETFNETIIPLR
YTPRKFVLQPKRKLLVTIESDQRALTAEERETAQKECFGAAVNENGNIEMENGDEDEDSQ
LSDEQYGYPKVEKEKWVSCIRVLDPRTEETTCCLELQDNEAAFSICTVNFHDKEYGTLLA
VGTAKSLQFFPKRAFEAAYIHIYRFVEGGKLELLHKTQVDGVPLALSQFQGRLLAGIGPV
LRLYDLGKKRLLRKCENKLFPNTILSIHTYRDRIYVGDIQESFHYCKYRRDENQLYIFAD
DVYPRWLTSAHHVDFDTMAGSDKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAP
NKVEEIVQFHVGDVVSSMQKASLIPGGGECIIYGTVMGSLGSFLPFGSRDDVDFFSHLEM
HMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPIDMQRKIADELDRSPAEILK
KLEEIRNKII
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcttaaccctccaaaaagcgacgggaatcctatgcgccattaacggc
aacttctccggccaccctaaatcccaagaactcgttgtcgcccgtggtaaagttctcgac
cttgtacgtcccgatgacagcggcaaactacaaaccctcctctccgtcgacatcttcggc
gctatccgctccctcgctcacttccgtcttaccggctctcacaaagactacatcgttatc
ggttctgattcgggtcggatcgtaatcctggattacaacaaggagaagaactcttttgac
aaggttcaccaagagaccttcgggaaatccggttcgcgccgtattgtacccggtcagtac
atcgccgtcgaccccaaaggacgcgccgtcatgattgccgccgccgagaagcagaagctt
gtttatgttctcaacagggatgcttctgccaggttaactatctcttctcctcttgaggcg
cataaatctcatactattacttactctattgttggtgtcgattgcggttttgataacccc
gttttcgctgcaattgagatggattatagtgaggcggatcaggatagtactggtttagca
gctgccgaggcgcagaaacatttaactttttatgagcttgatttagggcttaatcatgtt
tctaggaagtggtctgaaccggttgataatggggctaatatgcttgttacggttccgggt
ggtggggatggtcctagtggggtactcgtttgtgctgagaatttcgttatttataagaat
caaggtcatcctgatgttagggcattgattccaagacgggccgatttgcctgctgaacgc
ggggtcttgattgtctctgctgctactcataggcagaagagtatgtttttctttttgttg
caaaccgagtatggtgatatttttaaggttacgttagaacatgggaatgatggggtttct
gagttgattatcaagtattttgatacgattcctgtcacttcgtccttgtgtgtcatgaaa
tccggctttttgttcgctgcgtctgagtttggtaatcatggcttgtatcagtttcaggcc
attggggaggacccggatgttgagtcttctagtgctaggatgatggagttggaaactgag
gacgggtttcaacccgtgtttttccagcctaggaggcttaaaaaccttcttagggttgat
caggttcaaagtttgatgcctattatggatatgaaggtgtttaacctctttgaggaggag
acacctcagatttttaccttgtgtgggcaggggcctaggtcgtctgttcgagttttaagg
ccagggttagggattaccgagatggctacttcaccccttcccggcgtgcctaacgccgtt
tggactgttaagaagaatgttaatgatgaatttgatgcttacattgttgtgtcttttgct
actgttacgcttgtgttgtctattggtgagacggttgaggaagttaatgatagtgggttt
ttggatactaccccttctcttgctgtttctttggttggggatgattcccttatgcaggtt
catcctagcggtattaggcatattagggaagatggacgtatcaatgagtggagaactccc
ggaaagaggaccattgttaaagtcgggtacaataggcttcaggttgtcattgctctcagt
ggcggagagctcatttactttgcggtcgacatgaccggtcagttgatggaagtggaaaaa
catgagatgccgggggatgtggcctgcttggacattgcccctgttccagaagggagacaa
agatcccgctttttggctgtcggatcatatgacaacactatccgtattttgtctttggac
ccggatgattgtatgcaggtattgagtattcagagtgttttttcgccccctgagtcactc
ctgtttcttgagattcaagcatcgtcgggtggagaagatggtgccgatcatgctgctagt
cttttcctcaatgctggtcttcagaatggtgttctttttagaactgttgtggacatggta
acgggtcaactctctgattcccgttcccgatttttgggactgagacccccgaaattgttt
tctattaccgtcagaggccgacgtgctatgctttgcctctctagcaggccgtggttaggt
tacatctatcaaggacattttcttttgacacctcttacatgtggcacccttgaatttgct
gcctcgttttcatctgaccagtgtgctgagggtgtagttgctgttgccgcagaagcgctt
aaggttttcaccattgagaggcttggtgaaacatttaacgagaccataattcctttacgg
tacaccccaaggaaatttgtgcttcaacccaagcgaaaactgttggtaacaatcgagagt
gatcagcgagccttgaccgctgaggagcgtgaaactgcacagaaggaatgctttggggct
gcagtgaatgagaatggtaatatcgaaatggaaaatggggacgaggatgaggacagccaa
ctttctgatgagcaatatggttaccctaaggtagagaaggaaaaatgggtttcttgcatt
agggttctcgatccaaggacggaggaaaccacatgttgcttggagcttcaggataatgaa
gcggcattcagtatatgtactgtgaatttccatgataaggagtatggtactcttctagct
gttggtaccgcaaaatcgctgcaatttttccctaagagagcatttgaggcagcttatatt
catatctatcgatttgttgagggcgggaaactcgaactcttgcataagacccaagttgat
ggagtccccctagctcttagccagttccaagggaggttacttgctgggattggacctgta
ctcaggttatatgatttgggcaagaaaaggctgctcaggaaatgtgagaacaagctgttt
ccgaacactattctttcaattcacacttaccgagatcgtatttacgtgggtgatatccaa
gagtcattccattactgcaagtataggcgggatgagaaccaactttacatatttgccgat
gacgtttatcctagatggcttacttctgcacaccatgttgattttgacactatggctggt
tcggataagttcggaaatgtgtattttgttcggttgcctcaagacgtatctgatgagatt
gaagaagacccaaccggtggaaaaataaaatgggaacagggaaagctaaatggagctcct
aacaaggtggaggaaattgtccaattccatgttggtgatgtagtttctagcatgcagaag
gcatctctaatacctggcggtggagaatgcatcatctacgggactgtaatggggagcttg
gggtcgtttcttccgtttggttctcgtgatgatgttgacttcttttctcacttggaaatg
catatgaggcaggagcatccacctttgtgcggcagagatcatatggcttacagatctgca
tattttcctgttaaggatgtgattgacggcgatctatgcgaacaattccctactctccca
atagacatgcagaggaaaattgcagatgaactggataggtctcctgcagagatattgaag
aaactcgaagagatcaggaataagatcatttaa
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