Silene latifolia (white campion): 141610800
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Entry
141610800 CDS
T11116
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03022
Basal transcription factors
slaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141610800
09124 Replication and repair
03420 Nucleotide excision repair
141610800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141610800
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141610800
Transcription machinery [BR:
slaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
141610800
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
141610800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
141610800
NCBI-ProteinID:
XP_074285162
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Position
11:complement(6121493..6134021)
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AA seq
607 aa
AA seq
DB search
MAGYGGGGGEKLVMRNVKYKTKPKAPGISGVLIMTLEEFTFTPNDRTSAGIQVPFSKTKG
IFVTKEGAKQALLNVTKGVGNEGYIFEFENFKEREFCREHVVKAQSAVKGDKGPTDKPID
KNTQKQLSEKEMVQRIKLLQENSELAKLHQQLVIPGILTENEFWATRKKLLTVEHRSNHQ
RAGLKSAMLSVITPQNDGRTNKVTFNLTPEIIHQIFAEKPVVHKAFLKLVPKKMTETEFW
NKYCRAEYLHSTRNAVAAAAEAAEDEDLATFLKQDDILSSESRRKIRKVDPTLDMEADLG
DDYTHLPDHGISRDGIKEIPEPVTQYDQYKRNFLQDLNRHAEVVLEGRSIDVEPEDTKSL
AEAFARSRQADIGNETSDGNNSEERLNRLSRMTEIEDLQASREPPVAPLSIKDPRDYFFS
QQANALKSSGDMASGTKSVNRRMRTREAYTCMRDLVSDIMSVGLHDSMIKPEIALKVLNG
LTQNISSTKYNLGTNSRETVLDQLPSMTKDELLTHWATIQELLKHFWSSYPIKVDYLATK
VNKLKDAMQYIYPKLQEIKESVPSDLRHQVSLLVQPMVQALDAAFAHYDADLQKRMAKSG
SRVNGRD
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcgggttatggaggaggaggaggtgagaaattggtaatgaggaatgtcaagtataag
actaaacctaaagctcctggaatttctggtgttttgatcatgacattggaggagtttact
tttacgccaaatgatcgcacttctgctggtattcaagttcctttcagtaaaactaaaggg
atctttgttacaaaagaaggtgctaaacaagctttacttaatgtgaccaagggtgtagga
aacgaaggatatatttttgagtttgagaatttcaaagagagggaattttgccgtgaacat
gtggtcaaggcccagagcgctgttaaaggagataaaggacctactgataagcctattgat
aagaatacacaaaagcaactaagcgaaaaggaaatggtccaacggataaagcttttgcag
gaaaatagtgagctggcgaaactacatcagcagttggtgattcctggtatcttgacagag
aatgaattctgggctactagaaagaaattattgactgttgaacatagatcaaatcatcaa
cgtgcgggtttgaaaagtgctatgctttcagttataacaccacagaatgatggccggact
aacaaagtaacgtttaacttgactccagaaatcatacatcagatttttgctgagaaacct
gtggttcataaagcgttccttaaattagttcccaagaagatgacagagactgaattttgg
aacaagtactgtcgggcggagtatcttcacagcactagaaacgctgtagcggccgctgca
gaagcagctgaagatgaagaccttgctactttcttaaaacaggatgatatactgagtagt
gaatcccggagaaagattagaaaggttgatccaactttggacatggaagctgatctaggg
gatgactatacgcaccttccggatcatggtatatctcgtgatggtatcaaagagattcct
gagcccgtgacacaatatgaccagtacaagaggaactttttgcaagatcttaatcgtcat
gcagaagttgttctcgagggcaggtctatagatgttgagcctgaggacacgaagagtcta
gcggaggcctttgcaaggtcaagacaggcagatataggtaatgaaacatctgatggaaac
aatagcgaggagcggttgaatagattgtctagaatgactgagattgaggatcttcaagca
tctcgtgagcctcctgtagcgccacttagtatcaaggatcctcgagattatttcttctct
caacaagccaatgcactcaagagttctggagacatggcaagtgggaccaaatctgtgaat
cgacgaatgagaacacgggaagcttatacgtgtatgagggatttggtttctgacattatg
tctgtaggactccatgattccatgattaagcctgaaattgctttgaaggttctgaatgga
ctgactcagaatatatcaagtacgaaatataatcttgggacaaacagccgggaaactgtt
ctggatcagttacccagtatgacaaaagatgagctgttaactcattgggcaactattcag
gaattgctgaagcatttttggtcatcatatcctataaaagtggattatttggcaacaaag
gttaacaaattgaaagatgccatgcaatatatatatccaaagctacaggagattaaagag
tcagtgccgtcagatttgagacatcaagtgtccctgctcgttcaaccaatggtgcaggca
ttagatgctgcttttgcacattacgacgcagacttgcaaaaaagaatggccaagagcgga
tcaagagtcaacggccgcgattaa
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