Silene latifolia (white campion): 141611138
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Entry
141611138 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141611138
KO
K12589
exosome complex component RRP42
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141611138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141611138
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
141611138
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
141611138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
141611138
NCBI-ProteinID:
XP_074285692
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All DBs
Position
11:14276309..14280134
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AA seq
289 aa
AA seq
DB search
MVGLSRGETNFRRGGIAQDLRCDGRNRLSYRPVNVETGVIPQANGSARIKIGGTDVIASV
KAELGRPSSSRPDHGKVSIHVDCSATATPMHQGKGGEELSSELALALQRGLLGSKSGAGA
GIDLSSLCIVEGKTCWDLYIDCLVVSSDGNLLDSLGAGIKVALSDTGVPRVQVIAADASS
SSDQPEIDVSDEEFLQFDTSAVPVIITLIKAGKHYIVDATAEEESQMSSAISISVNRQSH
ICGLTKRGGAGLDPSIIHDMISVAKHVSEQFLNKLDSEIAAAQARQEES
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggtaggactatctagaggagaaacgaattttagaaggggtggtattgcgcaagacctt
cgttgcgacggccgaaaccggttatcttatcggcctgttaatgttgagaccggtgtcatt
ccgcaggcaaacgggtcggctagaatcaagataggtggaactgatgttattgcaagtgtg
aaggctgaactcggtagacctagttcttctcgacctgatcatggaaaggtttcaatacac
gttgattgcagtgcaacagctacaccaatgcatcagggcaaaggaggtgaagaattgtcg
tcagaactggcacttgctctacagcgaggcctattgggaagtaaaagtggagctggggct
ggaattgatctttcatctctgtgcattgtcgaggggaagacctgttgggatctatatata
gactgccttgtggtcagttcagatgggaatttgctggattccttaggtgccggcatcaag
gttgctctgagcgatacaggtgtaccacgagttcaggtgattgccgctgacgctagttct
tcaagtgatcagccagaaattgatgtcagtgacgaagaatttctacaatttgacacttcc
gcagtgcctgtcataattacattgataaaggcaggaaaacactatatagtagatgcaact
gcagaggaagaatcccaaatgagttcagctatttccatctctgtgaaccgtcaaagtcat
atttgtggcctaaccaaacggggtggggctggtctggatccaagcataatccatgacatg
atctctgtagctaaacatgtcagtgagcagtttctaaacaagttagattctgagatagct
gctgcacaagctcgtcaggaggaatcatga
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