Silene latifolia (white campion): 141611597
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Entry
141611597 CDS
T11116
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03015
mRNA surveillance pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141611597
09123 Folding, sorting and degradation
03018 RNA degradation
141611597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141611597
03041 Spliceosome [BR:
slaf03041
]
141611597
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141611597
mRNA cycle factors
Stress granule specific factors
141611597
Spliceosome [BR:
slaf03041
]
Complex C
Other components
Complex C specific factors
141611597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_7
RRM_Nup35
RBD_AKAP-17A
RRM_MARF1
PABC_AtC3H46
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
141611597
NCBI-ProteinID:
XP_074286275
LinkDB
All DBs
Position
11:complement(46360671..46367535)
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AA seq
631 aa
AA seq
DB search
MEQVHQIPGKETVTIGGGVEVVTTSLYVGDLEYNVTDAQLYDLFTQVGQVASVRVCRDSV
TLRSLGYGYVNFVNRLDAENAIKHLNFTPLNRKPIRIMHSHRDPADRKSGAGNIFIKNLD
KSIDNKGLQEAFHSFGKILSCKVATDLSGQSKGYGFVQYEDQESAQKAIDKLNGMLLNDK
QVYVGPFVRRQERENAIDKTKFTNVYVKNLAESMTDEDLAKRFGQFGKITSAVVMRDAEG
KSKCFGFVNFENADDAAKAVDGLNGQKFDDKEWYVGKAQKKAEREAELKQRFEQSIKDAV
DKYQGTNLYIKNLDDTIDDDKLKELFSEFGTVSSCKVMRDPSGVSKGSGFVAFSTAEEAS
RALTEMNNKMILSKPLYVALAQRKEDRRARLQAQFSQMIPVAIPATAAPRMPMYPPGAAQ
PLYYGQPPAAMLPPQAAFGYQHQLMPGIRGGTPVPNFLMPMVQQGHRPGGRHTGGAPGQQ
TQQAMPMMQQQMLPRGHYRYPPAHGLPGAPHSGAVPSLQFEIAGMSLHDAALSPTVPVGT
LATLLANATPDRQRLLLGENLYPMVEQMEPEMAAKVTGMLLEMDQPEVLHLLESPDALKS
KVAEAMDVLRNVVQQPALPNNSADQLAGIID
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagttcatcaaattccagggaaagaaacggtgacgattggtggtggagtggag
gtggtgacgacgtcgttgtacgtgggagatttggaatataatgtgacggacgcacaacta
tatgatctgtttactcaagtgggtcaggtggcttcggttcgggtttgtagagactcggtt
accctccggtctcttggttatggctacgtcaatttcgttaaccgccttgacgctgaaaac
gccatcaagcatttgaactttactcctctcaatcgaaagcctatcaggataatgcactct
catcgcgatcctgctgatcgtaaaagtggagctggaaacatctttatcaagaatttggac
aagtccattgacaacaaaggattgcaagaagcatttcattccttcgggaaaatcctttca
tgtaaggtggctactgatctttctggacagtccaagggatatgggtttgtgcagtatgag
gatcaagagtctgcccaaaaagcaatcgacaaactcaacggaatgttattaaacgacaaa
caagtgtatgtcggaccctttgtgcgcaggcaagaaagagagaatgctatcgacaaaacc
aagttcaccaatgtgtatgtcaagaatcttgctgagtcaatgacagatgaagatttagca
aaacgttttggtcaatttgggaaaatcacaagtgcagttgtgatgcgtgatgcagaaggg
aaatcaaaatgcttcggatttgtcaactttgaaaatgcagacgacgctgctaaggctgtt
gacggtttaaatgggcaaaagtttgacgataaggagtggtatgttggtaaagcgcagaag
aaggctgaaagggaagctgagttgaagcaacgattcgagcagagtattaaggatgcagtg
gacaaatatcaaggcactaacctttatataaaaaatttggatgatactattgatgatgat
aaactgaaagaattattttctgaatttggtaccgtcagttcttgcaaggttatgcgtgac
ccaagcggtgtaagcaaaggatcgggctttgttgctttctcgaccgctgaagaagcctct
cgagctttgacggagatgaacaataagatgattttaagcaaacctctttatgttgcgcta
gcacaacgcaaggaagatcggagggcaaggttacaggcccagttctctcagatgatccct
gtggcaattccggcaactgctgctcctagaatgccgatgtaccctcctggtgctgcacag
cccctatattatggccaaccaccggctgctatgctaccacctcaggctgcattcggatat
cagcaccaacttatgccaggtataaggggcggcactcctgtgccaaattttttaatgcca
atggttcagcaaggccatcgcccaggtggcaggcatacaggtggcgctccgggccagcaa
actcagcaggccatgcctatgatgcagcagcagatgctacctaggggacattatcgatat
cctccagcgcatgggctaccgggtgctccacactctggtgcggtccccagtcttcagttt
gaaattgctggcatgtcattacatgatgctgctttatctcctactgttcccgttggcact
ttggctaccctgcttgctaatgctactcctgatcgtcagagactgttgttgggcgagaac
ctttatccgatggtagagcagatggagccagaaatggcagcgaaagtaacgggaatgctg
ctagagatggaccagcctgaggtactacatttgctggaatcaccagatgccttgaaatcc
aaggttgccgaggccatggatgtcttgcgcaatgtcgtacagcagccagccctgcctaac
aattctgctgatcagcttgctgggatcattgactga
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