Silene latifolia (white campion): 141611701
Help
Entry
141611701 CDS
T11116
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141611701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141611701
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141611701
Spliceosome [BR:
slaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141611701
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
AAA_22
DEAD
T2SSE
AAA_19
Cas3-like_C_2
nSTAND3
AAA_30
PhoH
Sigma54_activ_2
SRP54
AAA_7
ABC_tran
PWI
Flavi_DEAD
AAA_16
Motif
Other DBs
NCBI-GeneID:
141611701
NCBI-ProteinID:
XP_074286404
LinkDB
All DBs
Position
11:63023137..63026328
Genome browser
AA seq
993 aa
AA seq
DB search
MMSGGDDLKTWVSDKLMCLLRYSQPTLVQYVTDLSKQSNSPSDVLAKLVELGMSPDSDTR
AFSEELHDRVHGHNARARVSFRSRNFRRKNSYEDEELDDEFADTKKEEKEEEDDDCGSEE
ERQCDKKEREELEKHIREKDDAKTRNGATVITSDKEKEGENQTSKYDIGLLRKVSREEYL
KKRVVQKVDELKDEILDERLFDDQVVTESERRDLKRKVELYGIVNGFVSERSAGEISTEY
AIPEAYDDAGRVNQKKRFSVVSQRYRDTESVSEQEEWEHQQLRKSTLSFGSKDKRECGNT
YQLVFEDQVEFIKASMIEGSNFEDKTETQSMQRCKLKSGMEKLKDERKSLPIYSYKEELL
KAVKENQILIVVGETGSGKTTQIPQYLHEAGYTKLGIIGCTQPRRVAAMSVSARVSREMG
VKLGRQVGYSIRFEDCTSDKTVVKYMTDGMLLREFLRDPTLSSYSVIMVDEAHERTISTD
ILFGLVKDVARSRPELKLLISSATLDAKKFSDFFDFAPEFNIPGRCFPVQVFYTNTPVSD
YLDSAIITALQIHVTEPAGDILIFLTGQEEIETTEELLKNRMKGYGSQIPELIICPIYAN
LPSDLQAKIFDPTPDGTRKVVLATNIAETSLTIDGIRYVIDPGFVKMKSYNPRTSIESLL
VMPISKASARQRAGRCGRTGPGKCYRLYTSYNYLNDLEDNTPPEIQRINLANVVLSLRSL
GINDLLNFDFMDPPPTEALLKAIEMLYALGAVNKEGELTKTGRRMAEFPLDPMLSKMIVA
SEKYKCSEEIITIAAMLSVGNSIFYRPKNKQVHADIARMRFHEGNVGDHIALLKVYNDWK
SGDYGTNWCYENFIQVRSMKRARDIRDQLLGLLERVEIEVTSSLNDLDAIKKAIASGFFP
HAAKLQKDGAYRTVKHPKTAYIHPSSGLAQTESQPRWVLYHELVLTSKEYMRQVTELKPE
WLVEIAPHYYQLKDVEDHSSKRVPRGIGRPAAT
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcggaggagatgatcttaaaacatgggtctctgataaattaatgtgtcttctg
cgttattctcaacctactttggtacaatacgtaactgacttatctaagcaatctaattcg
ccttcagacgttcttgcaaagcttgtggaactcggtatgtcgcctgatagcgataccagg
gcgttttcagaggagttgcacgaccgggttcatggccacaatgcaagagccagagtttct
tttaggtcaaggaatttcaggaggaagaatagttatgaagatgaagaacttgatgatgag
tttgcggacaccaaaaaagaagaaaaggaagaagaagatgatgattgtgggtcagaggaa
gaaaggcagtgcgataagaaagaaagggaggaattggagaaacatatacgggaaaaggac
gatgctaaaactaggaatggagccacggttataacgtctgacaaggagaaagaaggagaa
aatcaaacaagtaagtatgatattggtttgcttaggaaagtttcgagggaagaatacttg
aaaaaaagggtagtgcagaaagtggatgaactgaaagatgagatattagatgagcgtctg
tttgatgatcaggttgtaacggaatctgagcgtcgtgatctcaagcgtaaggtggaactt
tacgggattgttaacgggtttgttagtgagcggagtgctggtgaaatttctactgagtac
gcaattcctgaggcctatgatgacgcaggccgtgtaaatcagaagaaaaggttttctgtt
gtctcacagcgttacagagacaccgagtcagtttctgaacaggaagaatgggaacatcag
cagctccgaaaatcaaccctaagttttggttccaaggacaaaagagaatgtggaaatact
tatcagttagtttttgaagatcaggttgagtttataaaggcatctatgattgaaggaagt
aattttgaggataagacggaaactcagtcaatgcagagatgcaaattgaaatctgggatg
gaaaagcttaaggatgagaggaaatcactgccaatatattcttacaaagaagagttgctc
aaagctgtgaaagagaaccagattctaatagttgttggtgagacgggttctggtaagact
actcagataccacagtacctccacgaagcgggctatacaaagctcggaataattgggtgt
actcaaccacggagagttgctgcaatgagcgtttctgcccgggtttcccgagaaatgggt
gtaaaactagggcgccaagttggttattccatcagatttgaagattgtacttctgataaa
acagttgttaagtacatgactgatggaatgcttttacgcgagtttcttagagaccctacc
ttatcaagttacagtgtcataatggttgacgaagcccatgaaagaacaatttccactgac
atattgttcgggttagttaaggatgtcgctcgttccaggccagagttgaagctactgatc
tcaagtgcaactcttgatgctaaaaaattcagtgacttctttgattttgcaccagagttt
aacattccgggaaggtgttttccggttcaggtattttacacaaataccccagtgtcggat
tatctggattcggcaatcatcactgctttgcagatacatgttaccgaaccagcgggtgac
attctgatatttctgacagggcaagaggagattgaaacaacagaggaattactgaagaac
aggatgaaagggtatgggtcacagattcctgaattgataatctgccccatttatgctaat
ctgccatcagatttgcaggccaagatatttgacccgactccggatgggacccggaaggtt
gtcttggcaactaatattgcagaaacatcactgactattgacgggatcaggtatgtgata
gacccgggatttgtaaagatgaagtcatataatccacggacaagtattgagtctttattg
gtaatgccaatctcaaaggcgtcagcgaggcaacgggcaggtcgttgtgggcgaaccggg
ccaggtaaatgctatagactttacacttcatataattacttgaatgatttggaagataat
actccaccagaaattcagcggataaatcttgcaaatgttgtgctttcccttcggagcctt
ggaattaatgatttgctgaactttgattttatggacccaccgccaaccgaagcattgttg
aaagccattgagatgttgtatgcccttggggctgtcaataaagaaggtgagctaactaag
actgggaggagaatggcggagtttccgcttgatccaatgctgtcaaaaatgattgttgct
tccgagaagtataaatgctcggaagaaatcatcacaattgcggccatgctttcagtaggg
aattcgatattctaccgtcccaagaacaagcaagtacatgccgacatagcaaggatgaga
tttcacgagggcaatgtaggagaccatatcgctttgctcaaggtgtacaatgactggaaa
tcaggtgattacggaaccaattggtgctatgaaaattttattcaggttaggagcatgaaa
agggcaagagatattagagatcagcttctagggcttttggagagggttgaaattgaagtt
acctccagcttgaatgatttggatgctataaaaaaggcgatagcatcagggttctttcca
cacgctgcaaagttacagaaggatggagcttacaggactgtcaaacatcctaagacagct
tacattcacccgagctcaggtctagctcagactgaatcacaaccgagatgggttttatat
catgaattggtgttgacaagcaaagaatacatgagacaggtaactgaactgaaacccgag
tggttagtcgaaatagcacctcattattatcagctcaaggacgttgaagatcattcttcg
aagagagtgccacgcgggattggacgtcctgctgctacttaa
DBGET
integrated database retrieval system
