Silene latifolia (white campion): 141612035
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Entry
141612035 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141612035 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141612035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141612035
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141612035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Glyco_transf_8C
Motif
Other DBs
NCBI-GeneID:
141612035
NCBI-ProteinID:
XP_074286833
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Position
11:164002899..164013380
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AA seq
753 aa
AA seq
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MPRKPNYGYDYDDDNEFDEYQDYVDEDDNSLQKGEAAAVTQETVKLGVWHCSICTYDNDE
NMTSCEICGVLRFPPPNTGSNIDKDAVSGGGDRDYGVSKLAKALFASVPSQAPKRAVASQ
PQTFVNVTGGGNGYHSNESTQRLCHLLSCGRTDPSSRPHTTIAPFKFDIPSPDDIISSRL
NSSKKGGSVAPPGFAVKNDSTPTESSVRQTGVNTASTGRTVPLEENSFSSTSDVFRNIDV
VDGLPSSERSDTFSTRKPKSNNNMAESSSFAREENPESVSSGLEDMSLNSKPGSSKPILP
KKSLAQYKPEKWMLPEKESSLMTQLNLAIVGHVDSGKSTLSGRLLHLLGQISQKQMHKFE
KEAKQHGKGSFAYAWALDESAEERVRGITMTVAVAYFDTKNYHVVLLDSPGHKDFVPNMI
SGTTQADSAILVLDASIGAYETGMDIAGGQSREHAQLVRSYGVDQIIVAINKMDVVAYSQ
ERFDLIKQQVGSFLRHCGFKDSSVFWIPVSAMENQNLVASASDVRLNSWYDGPNLLDAID
KLHPPKRDYEKPLLMPICDVVKTRSTAQISSCGKLEAGALRNGCKVLVMPLGDVAVVRSI
ECNSQSCTVARAGQNVAVVLQGIDATHVKAGGVLCHPDFPVRVASHLELKILVLDVKIPI
LIGSQVEFHIHHAKEAARVVKIVSLLDPRTGKETKKAPRHLLAKQSAVIEVALQGEVCAE
EFSSYKALGRVFLRQSGRTIAAGVVTRVYEDQK
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaacctaactacggatatgattacgacgatgacaatgagtttgatgagtat
caggattatgtggatgaggatgataattctctacagaaaggtgaagcagctgcagtgact
caggagacagttaagctcggagtatggcactgctccatctgtacgtatgataatgatgaa
aatatgacctcttgtgagatatgtggcgttcttcgttttcctccacccaatactggcagc
aatattgataaggatgcagtttctggtggcggggacagagattatggagtatccaagtta
gccaaggcactctttgcctcagttcctagtcaggcacccaaaagggctgtagcttctcaa
cctcaaacttttgtaaatgtcactggtggtggcaatggataccatagtaacgagagcact
cagcggctttgtcatttgctctcttgtggtcggactgatcctagtagccgcccccataca
actatagcccccttcaagtttgatatcccgtcaccagatgatatcatctccagtcgtttg
aattcatcaaaaaaaggaggttcagtggctccaccaggctttgctgtaaagaatgattcc
acaccgacagagtctagtgtgagacagactggtgttaatactgcatcgacaggaagaaca
gttcctttggaagagaacagtttctcctcaacttcagatgtgttcaggaacattgacgtc
gttgatggtctgccaagctctgaaagatctgataccttctctacaaggaaaccaaaatcc
aataataacatggcagagagtagttcttttgcaagagaagaaaaccctgagagtgtttcc
agtggcttggaggatatgtctttgaacagcaagcctggatcctccaaacctattcttcct
aaaaagtcccttgcacagtacaaacctgagaagtggatgctacctgagaaagaaagcagt
ctaatgactcaactaaatcttgccattgttggccatgttgattcagggaagtccactctg
tcaggcagactcttacaccttttaggccagatatctcagaagcaaatgcacaagtttgag
aaagaagcaaagcaacatggaaagggctcatttgcttatgcctgggctttggacgagagt
gctgaagaaagggtacggggaataaccatgacagttgctgttgcttatttcgacactaaa
aattaccacgtggttttgctggactctccaggccataaagactttgtcccaaatatgatc
tctggaacaacccaagcagactcagcaattcttgttctagatgcctcaattggtgcatat
gaaacgggtatggatattgctgggggacaatcacgggagcatgcacagcttgttcgtagt
tatggtgttgatcaaattatagttgctatcaacaaaatggatgttgtggcatactcacaa
gaacgatttgatctaattaagcagcaggttggatcttttcttcgtcattgtggtttcaaa
gattcttccgtcttctggattcctgtcagtgcaatggaaaatcaaaatctggtggcttct
gcttctgatgtacgtctaaattcgtggtacgacggacctaatcttttagatgcaatagat
aagctgcatcctcctaaaagagactacgaaaagcctctgctcatgcctatttgtgatgtt
gtcaagacacggtctacggctcagatttcttcatgtggtaaattggaagctggagctctt
cgaaatggatgcaaggttttagttatgcccttgggagatgtagcagttgtacgctctatt
gagtgcaactcccagtcttgtaccgtcgcaagggcggggcagaatgttgctgttgttcta
caaggaattgatgctactcacgtcaaagcagggggggtgctgtgtcatcccgattttcct
gttagggttgcttctcacttagagttaaagattctcgttctcgatgtgaaaatcccgatc
ctgattggttcccaggtggaattccacattcaccatgcaaaagaagctgctcgagttgta
aagatcgtgtcattgctcgatcccagaaccggaaaggagacaaagaaggcacctcgccac
cttttagcaaagcaaagtgctgtaatcgaggtagctttgcaaggagaagtttgtgctgag
gaattttccagctataaagctcttggccgagttttcctacggcaatcaggaagaaccata
gcagccggtgttgtgacccgagtatacgaagatcaaaagtga
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