Silene latifolia (white campion): 141612510
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Entry
141612510 CDS
T11116
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141612510
03015 mRNA surveillance pathway
141612510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141612510
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141612510
mRNA cycle factors
P-body specific factors
141612510
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
141612510
NCBI-ProteinID:
XP_074287410
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All DBs
Position
11:complement(208807205..208820956)
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AA seq
1212 aa
AA seq
DB search
MEQQQQQEEFNKVGEHKQDDEGTRLPDVGCRSGGEHGKQDNEEAVARIDELKKSIEAKMS
LRQSNLKPERPDPAFLRTLDSSIKRNTAVIKKLKVITEEQRESLMDELRGVNMSKFVTEA
VAAICDAKLKSSDILAAVQICSLLHQRYPDFSSSLSQGLLKVFFPGKVAEDLEADKNSKA
MKKRSTLKLLLELYFVGVIEDSNIFINIIKDLASVEHLKDRDATQTNLSLLATFARQGRV
FLGLPLSGPELNEEFYRELSVTADQKKFIKIFHGYYDTITEVLQAEHASLRHLEHENAKI
LNFKGELTDDNASSYEKLRKSYDNLYRGVLSLAEAIDMQPPVMPEDGHTTRVTTGDDSAS
SATGKESSTIEPVWDDEDTRAFYECLPDLRAFVPAVLLGEAESKGSEQPAKLHEQSADVA
TESDHSPTATEAIAESSSGSGVLEDGKTNEKSQEKDAKGKDKDDTETKDAEKDKGKEKDT
DKKGDKEKGKKGLDSTNLDSLLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNV
PRTSLELLPYYSRMVATLSTCMKDISSMLLQLLEEEFNFLTNKKDQMNIETKIRNIRFIG
ELCKFKIAPAGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETNVRMANMLEIL
MRLKNVKNLDPRHSTLVENAYYLCKPPERPARISKIRPPLHQYIRKLLFSDLDKSSIEHV
LRQLRKLPWSECEPYLLKCFLKVHRGKYGQIHLIASLTAGLSYYHDHFSVSVVDEVLEEI
RLGLEVNDYGMQQRRLAHMRFLGELYNYKHVDTSVIFETLYLILVFGHGTPEHGVLDPPE
DCFRIRMVITLLETCGHYFDRGSSRRKLDRFLIHFQRYTLGKGVLPLDIEFDLQDLYADL
RPNMTRYMSIDEVNTALAELEEHEVKANTKKQLEIENRSNSITQTNTARGQRLANGVDQN
GGVHDVTGDSDTDTGSGSVGAAPHDDDDDLDDENHEAGSEAEDEEDDDEEGGLASDEDGE
IHFRQKAPNTEEEDDFDRELKALMQESLESRKLELRTRPTLDMKIPMSIFESSSKDHHGR
VGEGESGSDTLDEENEGNRDVRVKVLVKRGHKQQTKQMYIPQECSLVRGTKQKEYAELEE
KQDIKRLVLEYNDREEEEINGINNQVGGWTQAGVGRYLGRGSTWDVSGGRHSGARSRFHH
HSGGGYYYGRRR
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaacaacaacaagaggaattcaacaaagttggtgaacataaacaagatgat
gagggtactaggctgcctgatgttgggtgccgtagtggtggcgaacatggaaaacaagac
aatgaggaagctgtggctcgtattgatgaattaaagaagtcaattgaggcaaagatgtct
ctacgtcaaagtaatttgaaacctgaaaggcctgatcctgctttcctgaggactctagat
tccagcatcaaacgcaacactgcagtaattaaaaagcttaaggtgataaccgaagaacag
cgagaaagtttgatggatgaactgcgaggtgtcaacatgagtaaatttgtgacagaggca
gttgctgctatatgtgacgctaagcttaaaagttcagacatattggctgctgttcagatt
tgttccttacttcatcaaagataccccgacttctcatcaagcctaagccaaggcttgttg
aaggtgttctttcccggaaaggtagctgaagacttggaggcagataagaactcaaaagcc
atgaagaaacgtagcacgttaaagcttttgttggaattatattttgttggagtaatcgaa
gacagcaacatttttattaatatcataaaagatcttgctagtgtagaacacttgaaggat
cgagatgctactcaaactaatctatctcttcttgccacttttgctcgtcaaggaagagtt
tttttagggcttccattatctggaccagagctaaatgaagaattttacagggaacttagt
gttacagctgatcagaagaaatttataaagatcttccatggatattatgatactattact
gaagttctacaagctgagcatgcttctcttcgccatttggagcatgagaatgctaaaatt
ctgaactttaagggggagttgactgatgataacgcgtcttcatatgagaagttacgaaaa
tcttatgacaatttgtatcggggtgttttatccttagctgaagccattgacatgcaacct
ccagtcatgccagaggatggccataccacccgagtaacaactggagatgattctgcatct
tcagctactgggaaagaatcttccactatcgaaccagtatgggatgatgaagatacaagg
gccttttatgaatgcttgccagatcttagagcatttgttccagcagttctattgggtgaa
gcggagtccaagggaagtgaacaacctgcaaagctgcatgaacaatcagctgatgttgcg
acagaatctgatcatagcccgacagctactgaggctattgccgagtcctcttcggggtct
ggagttttggaggatggtaaaacaaatgaaaaaagccaggagaaagatgcgaaagggaag
gataaagatgatacagaaactaaggatgctgagaaagataaggggaaagaaaaagacact
gataagaagggagataaagagaagggaaaaaaaggtcttgatagtaccaatttggactct
cttttgcagcgccttcctggttgtgttagccgtgaccttattgatcaattgactgttgaa
ttttgctatcttaactcaaagtctaatcggaaaaagcttgtgagggcattattcaatgtc
cccaggacttcccttgagttgctgccttactactcgcgcatggttgcgactttgtcaacc
tgtatgaaggatatttcttctatgctgttgcaattgttggaggaggagtttaacttctta
actaataagaaggaccaaatgaacattgaaacaaagatcaggaatatcaggtttattgga
gaactgtgtaaatttaaaattgctccagctggccttgtttttagctgtttaaaggcttgt
ctggatgacttttcccaccataacatagacgtggcttgcaatcttctggagacatgtgga
aggttcttgtaccgttctcctgagactaatgtacgcatggctaacatgttggagattctt
atgcgcctgaaaaatgtgaagaatttggatcctcgtcatagtactcttgttgagaatgct
tactatttatgcaaacctccagaaagacctgctagaatttctaaaatccgccctccgttg
catcagtacattagaaaattgctcttctcagatcttgacaagtcatcaatcgagcatgtg
cttagacagctccgcaaattgccatggagtgagtgtgagccgtatttattgaaatgtttt
ctgaaggttcaccgaggaaaatatggacaaattcatctgattgcatctctgacagctggc
cttagttactatcatgatcacttttctgtttctgttgttgatgaggttttggaggagatc
aggttgggcttagaagtgaacgactatgggatgcagcaacggcgccttgcacacatgcgt
ttcttaggagagctgtacaactataaacatgtggatacatcagttatttttgagacgcta
tatctgatccttgttttcggccatggtacaccagagcatggtgtcctggacccacctgaa
gactgtttccgcatcagaatggtgatcacgcttctagagacatgtggacattattttgat
cgaggttcttccagaagaaaacttgatcgatttctgatacatttccagcgttatacacta
ggcaagggtgtcctgccgcttgatattgagttcgatttacaggacctgtatgcagatttg
cgacccaacatgacacgctatatgtcgattgacgaagtcaacacagctcttgcagaacta
gaggagcatgaagtcaaagccaataccaaaaagcaattagaaatagagaatcgttcaaat
agcatcactcaaaccaacaccgctcgcggtcaacgcttggcaaatggtgttgaccaaaat
ggcggtgtacatgatgtaacaggggatagtgacactgacaccgggagtggctcagttggt
gctgcgccacatgatgatgacgacgacttggatgatgagaatcatgaggcagggagtgaa
gctgaggacgaggaagatgatgatgaagagggtgggctcgcttctgatgaagacggggaa
atccattttaggcagaaagcaccaaataccgaggaagaagatgattttgatcgagagctc
aaggctctcatgcaagaaagcttggaatctcggaagttggagttgcgtactcggccgaca
ctggacatgaagataccaatgagcatttttgagagttcctccaaggatcatcatgggagg
gtgggagaaggcgagagcgggagtgatacattagatgaggagaatgaaggaaatcgagat
gtccgggtgaaagtcttagtaaagcgtgggcacaagcaacaaacgaagcaaatgtacatt
cctcaagagtgctctcttgtccggggcacgaagcagaaagaatatgctgagctggaagag
aagcaggacataaagaggttggttttggagtataatgatagagaagaggaggagataaat
gggattaataatcaagtagggggttggacacaggctggagttggcaggtatttgggtcgt
ggtagcacttgggatgtaagtggcgggagacattcgggtgcacgttcacgttttcaccat
cattcaggcggtggctattattacggacgaagaagatga
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