Silene latifolia (white campion): 141613181
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Entry
141613181 CDS
T11116
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141613181
09123 Folding, sorting and degradation
03018 RNA degradation
141613181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141613181
03041 Spliceosome [BR:
slaf03041
]
141613181
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141613181
mRNA degradation factors
5'-3' decay
Lsm complex
141613181
Spliceosome [BR:
slaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
141613181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
141613181
NCBI-ProteinID:
XP_074288023
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Position
1:183573461..183576994
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AA seq
98 aa
AA seq
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MSAGTGLEPLVDQLISVITNDGRNIVGYLKGFDQATNIILDESHERVFSTKEGVQQIVLG
LYIIRGDNICIIGELDEELDAELGLSELRGLPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctggaactggacttgaaccgcttgtggatcagttgatatcagttataacaaat
gatggccgcaatatagtggggtacctgaagggttttgatcaggcaacaaacattattctg
gatgaatcacacgagagggttttctctaccaaggagggtgtccaacaaattgtattgggt
ttgtacatcataagaggcgataacatctgtataattggggagctagatgaagagctggat
gctgagcttgggttatctgaactgagaggccttcctctgaagcctgttatccactag
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