Silene latifolia (white campion): 141617069
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Entry
141617069 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141617069 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141617069
03015 mRNA surveillance pathway
141617069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141617069
03041 Spliceosome [BR:
slaf03041
]
141617069
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141617069
Spliceosome [BR:
slaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
141617069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Cornifin
Motif
Other DBs
NCBI-GeneID:
141617069
NCBI-ProteinID:
XP_074290341
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Position
1:complement(198498307..198504345)
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AA seq
842 aa
AA seq
DB search
MSGGFFRGTTADQDTRFSNKQAKLLKSQKFAPELEHLVDVSKVKMDVIKPWIAKRVTEFL
GGFEDEVLINFIYGLLEGKEINGKAVQIQLTGFMEKNTGKFMKELWALLISAQNNASGVP
QQFLDAKEEETKKKKAESDRITGEIQKRKERETEEEKKRKMDGGLDNSSSEESNRRRERG
SDSHDGDHNGADVRNGFRGRNRSPRLPYPSDRPPSPHRGRRSLSVSKSFSNSRSYSKERS
ISKSISPRPRKYSVSPETVHRTPPKSVSPRKPIARGSTSPRRRPHSGRSPSPTRRRFHSP
LRRRSPSPFRRRSRSPLRRRSPPRRRRSPSPWRRRSPSPRRRRSPPPIRQRRRRSTSSPR
SRSPVKRRSPYGGGRRYQSPVRRRSPYPGRRVSPSPDRSPLPRRHRSPSPRRRRSPSPVR
RRSPYAVQRRSPVRVRRRSPTQSPSRSVSPANRSSASPARDSSASPIKMKSPGERARLND
RDRAEPLLVTRRQSMAMSPQRDHSDISRSRRKVPSVSPSPSLEKSPTYMESPKQKTRSSG
DNRRLASPLREVKGQRVRRSSPQNKDEESQHSRKGEQSEHKSTERGSDWPYRGKKQEPYD
KPAGRVRDITDLGQKDTKTTRKGLIDSLEVTPEEANGAKRSPRKDSVSRAKDVTSHPDNA
TKSDEKIGSLSKDTGDTSRPDALVNPRKKRRSPSVSSDSESELSENHKLEVTGKRKHKRS
SKREAVSDDTSSESEVEDRKEAKRRKKEEKKSRKEERRRRRDERRRRREEKRASRRKQKS
KDADALSPDLKKHEKVDKASNGERMPAKYSSEEETESQKKKLEIELREKALESLRAKKGI
RH
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcttcttccggggtacgacggccgatcaagatactcggttttcgaacaag
caagcaaagctgcttaaatcgcagaaatttgctcctgaattggagcacctggttgatgtt
tcaaaagtcaagatggacgttattaagccgtggatagcgaaaagagttactgaatttctt
ggcggatttgaagatgaagtgcttattaacttcatctatggtcttctggaaggaaaggaa
attaacggaaaagctgttcaaattcaacttacgggtttcatggaaaaaaatacgggtaaa
tttatgaaagaactatgggcacttctgatcagtgctcagaacaatgccagtggtgttccg
caacaatttcttgatgctaaagaggaggaaaccaagaagaaaaaggcggaatctgatcgt
ataacaggtgaaatacagaaaaggaaagagagggaaaccgaggaagagaaaaagaggaaa
atggatggtgggcttgacaatagctcttctgaggaatcaaataggaggcgggaacgaggt
tcagattctcacgatggagaccataatggagctgatgttcgaaatggatttagaggaaga
aacaggtctcccaggttgccgtatccatctgatcgacccccttcaccgcatcgtggtcgg
cgttctctgtcagttagcaagtcattttcaaattctagaagttactcaaaagaacgaagt
atatcaaaaagtatctctccaaggccacgaaagtattcggtttctccagaaactgtgcat
cgaactcctccaaagtctgtttctcccaggaaaccaatagctcgggggtctacttctcca
aggcgtagacctcattctggaagatctccatcgccaacgaggcgcagatttcactctcca
ctacgccggaggtctccttctccttttagacgtcggtcacggtcacctttgcgccgtcgt
tctcctcctcgacgtcgccgttctccctctccatggcggagacgatcaccttctcctaga
cgacgcaggtctcctcctcctattcgtcagcggagacgaaggtctacatcaagtcctaga
tctcggtctcctgttaagcgcagatctccatatggcggcggacgtcggtaccaatcacct
gttaggagaaggtctccatacccaggtcgtcgtgtgtccccatctccagatagatctcca
ttgccaaggaggcataggtctccatctcctaggaggcgtaggtctccgtctcctgtgcgt
cgtagatcgccgtatgcagtacaaagacggtcacctgttcgagttcgtagaaggtcgcct
actcaatcgccaagcaggtcagtctcacctgctaaccgcagctctgcatcacctgctaga
gacagttctgcttcgccaattaagatgaaatcacctggagaaagagctagattgaatgat
cgtgatcgtgctgagcctttactggtgacccgtagacaatcaatggcaatgtctccccaa
agagaccattccgatattagtcgttcacgccggaaagtaccatcagtatcaccctcacca
tcactagagaagtccccaacatacatggagtctcctaaacaaaagaccagaagctctggt
gataatagaaggttagctagtcctctccgtgaagtgaagggtcaaagagttcgtcgcagc
agtccacagaataaggatgaggagtctcaacattccaggaagggagaacagagtgagcac
aagtcaacagaaagaggatctgattggccctacagaggcaagaaacaggagccttatgat
aagcctgctggccgcgtccgtgatattactgacttaggacaaaaagatactaagacgacc
aggaagggcttgattgacagtttggaagttacgcctgaagaagccaatggtgcaaaaagg
tcaccacgtaaagattctgtatcaagggcaaaggatgttacatcacaccctgataatgct
acgaagtcggacgaaaagataggttccctttcgaaagatactggggataccagcaggcca
gatgccttggtgaatccacgcaaaaaacggagaagccctagtgtctcttctgattctgaa
tccgaattaagtgaaaatcacaaactggaagttactggtaagcggaagcataaaaggtca
agtaaacgggaagcggtctcagatgatactagttcagagtctgaggttgaggataggaag
gaagctaagaggagaaagaaggaagaaaagaagtcacgcaaagaggagcgccgtcgccgt
cgtgatgagcggcgtcggagaagggaagaaaagcgtgctagcagacggaaacagaagtca
aaggatgctgatgctttgtctcctgacttgaagaaacatgagaaggttgacaaagcttca
aatggtgaacgtatgccagctaagtattcaagtgaggaagagactgaatcacaaaagaag
aaacttgagattgagcttcgcgaaaaggcccttgaatctcttagagcaaagaagggcatc
cgccattaa
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