Silene latifolia (white campion): 141619654
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Entry
141619654 CDS
T11116
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
slaf03036
]
141619654
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
141619654
microRNA pathway
RISC loading complex
141619654
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
DEAD
Dicer_dimer
ResIII
PAZ
Cas3-like_C_2
SNF2-rel_dom
Helicase_C_2
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
141619654
NCBI-ProteinID:
XP_074292771
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All DBs
Position
X:complement(343116877..343127991)
Genome browser
AA seq
1410 aa
AA seq
DB search
MTKLVSMQLVETQDDSSARLPSARSYQLEAFEQAMKQNTIAFLETGSGKTLISIMLLRSF
AYLLRRPKHSYIAVFLVPTVVLVTQQAEVIETCTDLKVGKYWGDMGVDFWEAARWKDEQE
KHEVLVMTPKILLDALSHTFIKLDMIKVLIFDECHNAKGKHPYACIMKDFYHRQLHTNEV
PRIFGMTASPVKSKAKGSESYDSYWKEISALETLMHSKVYTCVSDAVLAEYISFPNSKVQ
LYDEEIPDKLQNDLIESVSSLKRQHINALTNLGVEESIEESLTHKLKKLSLTFQFCLGEL
GLWAALKATDILSLEETDIFSWDTLDVCGRTTIRAFIYDIKKELSANMPSGLSWSISDVK
SNMGGPLITSKVICLAESLLGYRTLEGMRCIIFVERVITAMVLEAILDALLFQSTGWKAK
YIAGNQSALKSQSRKEQNKIVNDFRNGTVHILVATSILEEGLDVQSCNLVVRFDPSYNVC
SFIQSRGRARMQNSDFLLMVKSGDASELSRVQNYLSSGEVMRKESLSHASLPCQPVEFDE
FDDIFYRVPSTGAIVTLSSSVSLIYFYCSRLPSDGYFKPSPRCVFDEVLETCTLQFPNSC
PISSVSVKGDSKINKQKLLKHFVCLEACKRLHDIGALTDKLVPDIVVEEGLVQELENEPY
DDNQPSYVPYEFVSSDCCAAVYHCYLMELKQDFYSEIPLHDIILVLRDELESDVGSMKFN
MGVDWGFMSVSMKYVGKIHLTPEQVVLCRQFQVAVLKILKYRNMTKLTGDIKELFKWDKD
IDMNGSHYDYLLLPCQWSHQSSSIDWECIYSASFLSNDSAVSIKSVKIETDHCENVYTKN
GYIHPSVLQNCLVCTPHNGYIYCVSGFLDGMNGNSLLSVKDDEIVTYKKYYQVRHEIDLV
FENQTLLCGRQVFRPQNFLLSCRQRREKESSDASVELPPEICLVIMSPVSVANFYTFSFV
PSIMHRVESMLLSSNLRRIILNGCMPNIIIPVPQVLEAITTKHCQEGFHLESLETLGDSF
LKYAVCQQLFNSFQNNHEGLLSIKKSKIVSNASLCKLGCQRKISGFIRFESFEPKSWIIP
GDLSDNSVLEEERITSERKVYSKGSRKMKSKRIADVVEALIGAFLTTGGEVAALLFMNWL
GIEVELSCIKYQRIFNIDPYKHVNISGLQSILNYSFKDPSLLVEAVTHGSYMLPEIPRCY
QRLEFLGDAVLDHLITIQLYAKYPGMTPGLLTDLRSASVNNDCYAQSSIRSGLYKHILHA
SQVLHKQLSATISHFEELSSNSTFGWELDINFPKVLADIIESLAGAIFVDSGYDKQALVN
SIVPLLEPIVTPETLKLHPVRELHDICQKHHYNTGKPVKSFENGIPSITLEVEANGTIFK
HTCTATDKTLANKIASRAILKSLKESIPDL
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattggttagtatgcagcttgtagaaactcaggatgattcaagtgctaggctt
ccttctgctagaagctaccaacttgaggctttcgagcaagctatgaagcagaacactatt
gcattcttggagacgggttctggaaagacattgatttccatcatgcttcttcgcagcttt
gcgtacttacttcgaaggcctaaacactcgtatatagcagtgtttttagtgcccacagtt
gttttggtgactcaacaagctgaagtcattgaaacctgtacggaccttaaagtaggcaag
tactggggagatatgggcgttgatttctgggaggctgctaggtggaaggatgaacaagaa
aagcacgaggtccttgtgatgactccaaagattctgcttgatgcgcttagccatactttc
atcaaattggacatgataaaagttttaatatttgatgaatgccataacgccaagggaaaa
catccatatgcgtgcataatgaaggacttttatcatcgtcagttgcatactaatgaagtt
cctaggatatttggcatgactgcttctcccgtgaaatctaaagccaaaggttccgaatca
tatgactcttattggaaagaaatttctgccctcgaaactttaatgcattcaaaggtctac
acctgtgtgagtgacgctgtgctggctgagtatatttcatttccaaactcaaaggttcaa
ctttatgatgaagagatccctgataaattgcagaacgatttgatcgagagtgtcagctca
ctcaaaagacagcacataaatgctctcacaaatttgggagttgaagaatcaatagaagag
tctctaactcataagttgaaaaagttgagcttaacatttcagttttgtttgggtgaactt
ggtctttgggcagcattaaaggctacagatattctgtctcttgaagaaactgatattttc
agttgggatacgttagatgtttgtggtcggactaccatcagagctttcatttatgatatt
aagaaagagttatcagccaacatgccatctggtctcagttggtctatctcggatgtaaag
tcaaacatgggtggcccgcttatcacgtctaaggtgatatgtctagctgaatctcttctt
ggatacagaactttggaaggtatgcggtgtattattttcgttgaaagggttatcactgca
atggttcttgaggcaattttggatgcactgctgtttcaaagcactggttggaaggcgaaa
tatatagccggaaatcagtctgcactgaagtctcaaagtaggaaggagcagaataaaatt
gtcaacgatttccgaaatggcacagtacacattttagttgctacctctattcttgaggag
ggtctagatgttcaaagctgcaacttggttgttcgttttgatccatcatataatgtttgc
agttttattcagtcaagaggtcgtgctaggatgcagaactcagattttcttttgatggtg
aaaagcggagatgcttctgaactctcccgagtgcagaactatctttccagtggtgaagta
atgcggaaggaatcgttgagccatgcctcactaccgtgccagcctgttgagtttgatgag
ttcgatgacattttctaccgcgttcctagcacaggcgcaattgtgactttgagttctagt
gttagtttgatatacttctactgctcacggctcccttcagatggatatttcaagccatct
ccccgctgtgtttttgacgaggttttggagacttgtactttacaatttcccaatagttgt
cccatttcatcagtatctgtcaaaggtgatagtaaaattaacaagcaaaaactgctgaag
cattttgtctgcttggaagcttgtaaaaggctccatgacatcggtgctctgactgataaa
cttgttccagacattgtcgtggaggagggtcttgtacaagaattagagaatgagccatat
gacgacaatcaaccgagttatgtcccatatgaatttgtcagtagtgattgctgcgctgct
gtctaccactgctatttaatggaactcaagcaagatttttattcggagatccctttacat
gatattatcctggtattaagagatgagcttgaatctgatgttggcagcatgaaattcaac
atgggagttgactggggtttcatgtctgttagtatgaagtatgtcgggaaaatacatttg
acccctgaacaggtggttctctgtagacagtttcaggttgctgtcctcaaaatcttgaaa
taccgaaatatgaccaagttgactggggacatcaaggaattgtttaaatgggataaggat
attgatatgaatggctcacattacgattatcttcttctcccatgtcaatggtcacatcaa
agttcatccatcgattgggaatgtatttattctgcatctttcctaagtaatgacagcgcc
gtttccatcaaaagcgtcaaaattgagactgatcattgtgagaatgtgtacactaaaaat
ggttatattcatcctagtgtactgcaaaactgtttggtctgtacacctcacaatggttat
atctattgtgtctcggggtttttagatggcatgaatggcaactcacttttgagtgtaaaa
gatgatgaaattgtcacttacaaaaagtactaccaagttaggcatgagatcgacttggtt
tttgaaaatcaaacattgctttgtgggagacaggtttttcggcctcaaaattttcttctc
agttgccgacaaagaagggagaaggagtccagtgatgcttctgttgaactgcctcctgaa
atatgtctcgtcattatgtctcctgtatcagttgctaatttttataccttctcatttgtt
ccatcaatcatgcatcgagttgaatctatgttgttaagttccaacttgagaaggattatt
ttgaatggctgcatgccgaatattattattccggtcccccaggtcctggaagctattacc
accaagcattgtcaggagggatttcatctggaatctctagagacccttggcgattcgttt
ttgaaatatgctgtctgccagcagttgttcaatagtttccaaaacaatcatgaaggctta
ctcagtataaaaaagagcaagatagtttcaaatgcttcattatgcaagctagggtgccaa
agaaagatctcgggtttcatacgttttgaatcttttgaacccaaaagttggatcattccc
ggtgacctgtctgacaattctgtattggaagaagaacgtattaccagtgaaagaaaggtt
tatagtaaaggatcccgtaaaatgaaaagcaagagaattgcagatgttgttgaagctcta
ataggcgcattccttacgaccggtggtgaagtagctgctttattatttatgaattggctc
ggaatagaggtggaactttcctgtataaagtaccagagaatcttcaatattgatccttat
aagcatgttaatatcagcggtctccagtctattcttaattattcgttcaaggacccgtct
ttgttagtcgaagcagtaacgcatggttcgtatatgttgcctgaaattccgaggtgctac
caacgcttggaatttctaggagacgcagtgttggatcatttaattactattcagctgtac
gctaaatatcccggaatgacacccggactacttactgacttgagatcagcatcagttaac
aatgattgctatgctcaatcgtccatcagaagtgggctttacaagcatattttgcacgcg
tcacaagtgcttcacaagcaattgtcagctaccatcagtcatttcgaagaattatcctcg
aattctacatttggatgggaattggatataaattttcccaaggttctggcggatattata
gaatcgttagctggagcgatatttgtcgattccggatacgacaaacaggcattagtcaat
agtatagtgcctctattagagcccatcgttactccagaaactctgaagcttcatcccgtc
agagaactgcacgatatttgtcaaaagcaccattataacacgggaaagcccgtcaaatct
ttcgagaatggaatcccatctatcacacttgaagtcgaggcaaatgggacgatattcaag
cacacttgcacggcaacagataaaactttggccaacaaaatcgcttcgagagctattctc
aagtctttgaaggaatctattcctgacctatga
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