Silene latifolia (white campion): 141619758
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Entry
141619758 CDS
T11116
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141619758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141619758
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141619758
mRNA degradation factors
5'-3' decay
Decapping complex
141619758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
Beta-prop_EDC4L
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
DUF5799
Beta-prop_EML_2
TACC_C
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
141619758
NCBI-ProteinID:
XP_074292879
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Position
X:complement(344582485..344592370)
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AA seq
1366 aa
AA seq
DB search
MASSGNTNPNVIPNQQGGVVGGVSGVSSGVNFDMNKFFKPATLPPPPAAANPTSYAAAAS
AGASFAPSASFPPPSGPYSFPPQTPPYYHPQLGHQHMPNFPPPDHHLNLLPQRSVSFPVP
PLQPVQNPTPNQNLNQNPNPNQNSNHGARLMAMLTPPPNFEYSNHPPTPMPTSLSASTGL
QQSPSAEFLMPQTVGVPQMLPVPGPVRMPSSKLPRGRHLVGERMVYDVDARLPGEEQPQL
EVTPITKYVSDPGLILGHQIAVNKTYICYGLKMGNIRALNINTALRSLLRGHTQRITDMA
FFAEDVHLLASASIEGRVCVWKISEGPDDEGKPQIYGHVVLAIHITSDNESVHPRVCWHC
HKQEILVVAIGKNIFRIDTLKLCKGADFSADEPLLCPVDKLVDGVQLVGKHEGEVTDLSM
CQWMTTRLVSASKDGTIKIWEDRKALPLLELRPHGGQPVDAAKFLSSPHQLGHIILITAG
PLNREVKLWASSGDEGWLLPSDAESWRCTQTLELNSSGDPRNEDVFFNQVVSLSQAGLLL
LANAKKNAIYAIHLEYGANPAATHMDYLAEFTVTMPILSFTGTSDVLPHGEHQVQVYCVQ
TQAIQQYALDISQCLPPPIEKSGIEKSESGVSLDKVNLPPLDPSESKSMEATYSTPASSN
EVSVPASSSETNCRELNTTYVDSTPTSLLSASSLTGISPVALPPLPLSPRLSRKTSDIRG
DHAFADYSVDRQMDSPQTSSSSMLSLNDDNRATQGNSSDVNQPAMFKRPTHLVTPSELMP
ISTADTTRAMETGKKESKTQDEEMNNDSANVEVEIKVVGESGISRSGEPTRSIDHPILTE
RNEKSFYSQASDLGADMTRECYASPSQSTIMEEARSSIMEALSQPSHSGDEEDEVSNDVS
PTPVFEGEKLKERNVQESAEISQGSVNGSSIQSFDTAFQQIIATAETVKEIMASMKEFQE
MQKQMSANAAAPVIKESRRLEGAVARCVEKATKANADALWARMQEEMAKHEKLIRDRTQQ
LTGNLMSKDVVPMLERLLKKELAAVGTNITRAIIPAIEKTVGSAITESFQRGVGDKAASQ
LEKSVTSKLEPAVARQIQLQFQTSGKQALQDGLKSCFEASIIPAFEVTCKAMFEQIDVAF
QKGIVEHTQAAQHHIETTHSPLALALRDSLNSASSLTQSLSGELADGQRKLLALAAAGAN
SQSGNQLVTQLSNGPLAGLHEKVDQPFDPTKELSRLISEHKYEEAFTSALQRSDVAIVSW
LCSQVDLQRMLTVMPLPLTQGVLLSLLQQLACDITKDTTRKLGWMLDVASCIIPHDPMIA
VHARPILEQVYQILNHQRSLPNTTPAEISSLRVIMHVINSMLMAYK
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaagcggtaacacaaaccctaatgttattcctaatcaacaaggcggtgttgtt
ggtggtgttagtggtgttagtagcggtgttaattttgatatgaataagttcttcaaaccc
gccacattacccccgcctcctgccgctgctaaccctactagttatgctgcagccgcatca
gcaggggcaagttttgctccctcggcttctttcccacctcctagtggaccatactctttt
cctccacaaaccccgccgtattatcaccctcagttaggtcaccaacacatgcctaatttc
cctcctccagaccaccatcttaatttacttccccaaagatctgtctcgtttcctgtcccc
ccgctgcagcctgttcaaaaccctaccccaaatcagaatctgaaccaaaaccctaacccg
aaccaaaactctaatcatggggctaggttgatggctatgttgaccccaccaccaaatttt
gagtactcgaaccatcccccaacacctatgcctacctctttgtctgcttccaccgggttg
caacagtctccgtcagctgagtttttgatgcctcagaccgtcggggtaccacagatgctt
cctgtgccaggacctgtacgcatgccgagtagcaagcttccgaggggaagacacttggtt
ggtgagcgtatggtttatgatgtggatgctaggttaccgggtgaggagcagccgcagttg
gaggttactcctattactaagtatgtgtccgatcctggacttattcttggacatcaaatt
gcggttaacaagacgtatatatgttatgggctaaagatggggaacattcgtgctcttaac
atcaacactgctttgaggtcgttgctccgcggccatactcagaggatcacggacatggcc
ttctttgcagaagatgttcatctactggccagtgcaagcattgagggaagagtttgtgtg
tggaagatctctgagggtccagatgatgaaggaaagcctcaaatttatggtcatgttgtg
ttggctattcatattactagtgataatgaatccgttcatccacgggtttgttggcattgc
cataaacaagagatactggtggtagccattggcaaaaacatattccgaatagacacccta
aaactttgcaaaggtgctgacttctctgcagatgaaccacttttgtgtcctgtagacaag
ttggttgatggggtccagcttgttggtaaacatgaaggggaagttaccgatttatcaatg
tgtcaatggatgaccacacgtctggtgtctgcttcaaaagatggcacgattaaaatttgg
gaagaccgcaaggccttgccactcctggaacttaggccccatggtggtcagcctgtcgat
gcggctaagtttttgtcttcacctcatcagctgggacacataatcctcatcacagcggga
ccacttaatcgagaggttaagctttgggcctcatctggtgatgaaggatggttgctgcct
agtgatgctgaatcctggcgatgcacacagacattggagttgaatagttctggtgatcct
cgaaatgaagatgtattctttaatcaagtagtgtccttgtctcaagcagggctgctatta
cttgcgaatgcaaaaaagaatgccatttatgcaattcatttggaatatggggctaacccg
gcagcaactcacatggattatttagcagagtttacagttacaatgcctatcttgagcttt
actgggacaagtgatgttttgcctcatggagagcaccaagttcaagtttattgtgtccaa
acgcaagccatacagcagtatgcactggacatctctcagtgcttaccgccaccaattgaa
aagtcgggtatagagaagtcagagtctggtgtatctcttgataaagttaaccttccaccg
ctagacccatctgaaagcaaatctatggaggcaacgtactctacgcctgcgtcaagtaat
gaagtcagtgttcccgcaagctcttctgagactaactgtcgcgagcttaataccacatac
gtggactctactcctacttcactcctatcagcatcaagccttactggcatttcccctgtt
gcacttccacctcttcctctcagcccgaggttatctagaaaaactagtgatattcgcggt
gatcacgcttttgctgattattcggttgataggcagatggatagtccacagacaagttca
tcgagtatgctctctttgaacgacgataatagagctacgcaaggaaattcatctgatgtt
aatcagcctgccatgttcaaacgtccaactcatttggtaactccttctgagcttatgcct
atatcaacggctgatacaacacgtgccatggaaacgggtaaaaaagaatctaagactcaa
gatgaagaaatgaataatgactcggctaatgttgaggtggagataaaagttgtgggtgaa
tctgggatttctagaagtggtgagccgactcgttcgatcgatcatccaattttgaccgag
agaaatgaaaaatccttctattcacaggcgtcggatcttggcgctgacatgactcgagag
tgttatgcgtcaccttctcaatcaactatcatggaagaagctagaagcagcataatggag
gctctgtcacaaccttcacattccggtgacgaggaagatgaggtcagtaatgatgtgtct
ccaactccggttttcgaaggggaaaaactgaaagagaggaacgtgcaagaatcagcagaa
atatcacaaggatccgttaatggttcaagcattcaatcttttgatactgcattccagcaa
attattgctacagcagaaacagttaaagagataatggcctctatgaaagaatttcaagaa
atgcagaaacagatgagcgcgaatgccgctgcaccagttattaaagaaagtagaagacta
gagggagccgtggcacggtgtgtggaaaaggctactaaagctaatgcagatgctttatgg
gcccgtatgcaagaagaaatggctaaacatgagaaattgatacgagatcgtactcagcaa
ttaactggcaatctgatgagtaaggatgttgtccccatgcttgagagattattgaagaaa
gaacttgccgctgttggtacaaatataactcgtgcaataatcccagctattgagaaaacc
gttggttcagctattaccgaatccttccagaggggtgttggtgacaaggcagctagtcag
ctagagaagtcagtgacgtcaaaactagaacctgcagttgcaagacaaattcaactccag
ttccagacttctgggaaacaagcacttcaggatggattgaagtcttgctttgaagcttcg
attatccctgcttttgaggtcacttgcaaagcaatgtttgagcaaatagatgttgctttt
caaaaagggattgttgaacatacacaagcagctcaacatcacattgagactacacattct
ccattagccctcgctcttagggattctcttaattcagcatcatctctcacccaaagcttg
agcggggaactggcagatggtcaaagaaagttgctagctcttgcagctgctggagcaaac
tcgcaatcaggaaatcagttggtaacacaattaagcaatgggccattggctggtctacat
gagaaggttgatcagccatttgatccaactaaagagttgtcaagattaatatctgaacat
aagtatgaggaagcgtttacatcagctttacaaaggagtgacgtggctattgtatcctgg
ttatgctcacaggttgacttgcagcgaatgttgactgttatgccacttcctttgacgcaa
ggcgttttgctctccctactacaacaacttgcttgtgatataacaaaggatacaacaaga
aagctagggtggatgttggacgtggcttcatgcataataccgcatgatccaatgatagcc
gtccatgcccgcccaatattggagcaggtttaccagatcttgaatcatcaacgaagtctt
ccaaacaccacacctgccgaaatctccagtcttcgtgtcatcatgcacgtcatcaactcg
atgctcatggcatataagtga
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