Silene latifolia (white campion): 141619840
Help
Entry
141619840 CDS
T11116
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141619840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141619840
03009 Ribosome biogenesis [BR:
slaf03009
]
141619840
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141619840
Spliceosome [BR:
slaf03041
]
Complex A
U1 snRNP components
U1 related factors
141619840
Complex B
141619840
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
141619840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
141619840
NCBI-ProteinID:
XP_074292963
LinkDB
All DBs
Position
X:346039660..346046677
Genome browser
AA seq
635 aa
AA seq
DB search
MAVDSTASAGPRYAPDDPTLPKPWRGLIDGKTGYLYYWNPETNVTQYEKPVVSSNGHSSA
RPSSGYVSSSVQVNHSSHGPQRDGGYVNDDDDNRVRGRSREKYQQSAKDEVALNGGGGLI
ARHEPLENGSGLSAEAYRRRHEISVSGDSVPPPFMTFEATGFPSEILREATGAGFSAPTP
IQAQSWPIALQGRDIVAIAKTGSGKTLGYLLPGFMHLKRLRNNSQMGPTVLVLSPTRELA
TQILVEAVKFGRSSRIVSTCLYGGAPKGPQLRELERGVDVVVATPGRLNDILEMKRIKLH
QVSYLVLDEADRMLDMGFEPQIRKIVKEIPSRRQTLMYTATWPKEVRKIAADLLSSPVQV
NIGNADELVANKSITQYVEVVSPMEKQRRLEQILRSQEPGSKVIVFCATKKMCDVLSRNL
SRQFGAAAIHGDKSQGERDNVLNQFRSGRSPLLVATDVAARGLDVKDIRVVVNYDFPTGV
EDYVHRIGRTGRAGATGVAYTFFSDQDSKHASELVKILEGANQRVPPEVRDMALRGGGMG
RGRRQWGSGPGGRDGGRGGRGDSSYGGRFNNRYEGNGRGNHDKGFRRSPSPDRRTGRSRE
RSRSPHRFDRGGAGQSFHETMMERLRSSPPRTGKY
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagattcaacagcttcagctgggccacgctatgcgcctgatgatccgacactt
cctaagccatggaggggtttgatagatggtaagactgggtacttgtattactggaacccg
gagactaatgttacacagtatgagaagcctgtcgtgtcttcaaatgggcactcctcggca
aggccgtcatctggttatgttagttcttctgttcaagtaaaccattcttcccacggaccg
cagagagatggtgggtatgttaatgatgatgacgataatcgtgttagaggtcgtagtcga
gaaaagtatcagcagtctgccaaagacgaagttgctttgaatggaggtggtggattgatt
gctagacatgaaccactggagaatggaagtggtttgtctgctgaagcttaccgtcgccgg
catgagatatcagtttctggagactccgttcccccaccattcatgactttcgaagctact
ggtttcccttctgagattctgagagaggcaactggggctggtttttctgctcctacgcca
atacaggcgcagtcttggccaattgctctgcaaggtcgggatatagtggcaattgcgaag
acgggttctgggaagaccttggggtatctgctcccaggttttatgcatctcaagcgccta
cgcaataattctcagatgggacccactgtgttagtgttatcaccaaccagggagctggca
actcagatactagttgaagcagtaaaattcggaaggtcgtccagaattgtatccacgtgt
ttgtatgggggagcacctaaaggccctcagttgagggagctagaaagaggagtggatgtt
gtggtagcgacacctggtcgtttgaatgatatactagagatgaagagaatcaaattgcac
caggtgtcgtacttggttcttgatgaagcggatcgtatgctggacatgggttttgagcct
caaattagaaaaattgtcaaggagataccttctcgccgccagactcttatgtacactgca
acatggccgaaagaagttcgtaaaattgctgcagatctactgtcaagtcctgttcaggtc
aacattggcaatgcagatgaacttgttgcaaacaagtccattactcagtatgtggaggtc
gtgtctcctatggagaagcagagaaggttggagcagattctgagatctcaagaaccagga
tcaaaagtcatagtcttctgtgcaacgaaaaagatgtgcgatgttctttctcgcaacttg
tctcgccagtttggagctgctgcaattcatggtgataaatctcagggtgaacgtgataac
gtcttaaatcagtttcgtagtggaaggtctcctctactggttgcaacagatgttgcagca
cgtggacttgatgtcaaggatatcagggtggtggttaattacgacttccctacaggggtt
gaggactatgttcacaggattgggaggaccggaagagcaggagcaactggagtggcgtat
acgtttttttcagatcaggacagtaaacatgcttcagaacttgttaagattctagaagga
gcaaatcagcgagttcctccagaggttcgagacatggctctgcgagggggtggaatgggt
aggggcaggcgtcaatggggttctggacctggtggtcgtgatggaggtcgcggtgggaga
ggtgattctagttatggtggcaggtttaacaataggtatgaagggaatggccgcggtaat
catgataagggattccgtcggagcccttctccagaccgtcggacaggccggagtcgtgaa
aggagccgtagccctcataggtttgaccgtggtggagctggacaaagttttcatgagacg
atgatggaaagattacgttcatctcctccaagaacagggaaatattaa
DBGET
integrated database retrieval system
