Silene latifolia (white campion): 141621982
Help
Entry
141621982 CDS
T11116
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141621982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slaf03009
]
141621982
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
141621982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Utp13
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_WDR41
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD_LRWD1
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_DCAF12
Ge1_WD40
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Beta-prop_VPS8
Nbas_N
WD40_like
Cytochrom_D1
ELYS-bb
WD40_CFAP43
CEPT76_peptidase
Motif
Other DBs
NCBI-GeneID:
141621982
NCBI-ProteinID:
XP_074294181
LinkDB
All DBs
Position
X:316352918..316359125
Genome browser
AA seq
878 aa
AA seq
DB search
MADVTATLKKSYKCSKFLEQFYSGGPVAVSTDGSFMGCACNNTIKIVKCVSANASIKATL
EGDSEAVTALAIAPDNAFLFAATHSCQIMVWDLSSFTRVRSWKNIGEGPVLAMACDVSGG
MLATVGADRKVLVWDVDAGYCTHYFKGHTGIVNCILFHPDPNNLVLFSASDDTTVRAWDL
VAGKSKQCAATMKNHTSTVVSLAISEDRMFLFSAGRDQVVSVWDLSSYNCKMTILTNEVL
AAVCAIHSGTPFYDSLSLNKAVESKSMQEVYFLTAGERGVVRIWEVCLSKQKYSEVTFRT
DQDDERRGFTAAHMLPSDQGLLCITADQQFLFYSPLKHSEKILHLSLTKRLIGYNEVIVD
MKFVGEDENLLAVATNIEQVHVYDMASMSCSYVLAGHSKIVLCLDTCIGSSGSTYIVTGS
KDKDVRLWDSETRKCVGVGIGHLKAVGAVAFSKKQRNFFVSGSRDKTLKVWSFEGLISDS
DKPYRLKTKGSVGAHKNDINSVAISPDDSFVCSGSEDRTARLFKLPELVEMASLVGHKQG
IWFVEFSPVDPCVLTASKDKTIKLWSVRDHSCLKTFEGHTSTVYRASFISRGAQLVSTDA
NGLLKLWNVKSIECIATYDQHEDKVWALAIGRKTEMLATGGSDAVINLWNDSTAAEKEEA
FRKEEEEVLRGQDLENAISDADYAKAILLAFQLKKPHKLLELLLELYRKNIRIDHVRNAL
QSLGMEELGRLLEYVREWNTKPKLCHVANSMLLQAFSIHRPIDIDEVKGIGELLEGLIAY
SQRHYNRIESIERSLFTLDYTLNAMSVIEPEDVSRLTGSTSKRNLDKETASDVQEGGITE
TMETKPNKSSRKRKFRNSTETCTEMTKTLLDTKATSTV
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgtaactgcaaccctgaagaaaagctacaaatgcagtaaattcctggaacaa
ttctacagtggtggaccagtggctgtctcaactgatggctcgttcatgggatgtgcctgc
aacaacaccattaaaatcgtcaagtgcgtcagcgcaaacgcctctatcaaagccaccctc
gaaggcgactctgaagccgttactgccctcgctatcgcccctgacaatgcattccttttc
gctgctactcacagttgccaaattatggtttgggacctctcttcgttcacccgtgtgcgc
tcttggaagaatattggtgagggtccagtgttggcaatggcttgtgatgtgtctggtgga
atgcttgcgactgtcggagctgacagaaaagtgcttgtatgggacgtagacgcaggatat
tgcacacattattttaagggacatacaggaattgttaattgcatcctatttcatcctgat
cctaacaacctcgttcttttctcggcaagtgatgacaccactgtccgggcttgggatctt
gtagctggaaaatcaaaacaatgtgctgctacaatgaagaatcacacttctactgtggtt
tcgttagcaatttcagaagatagaatgttcctgttcagtgctggaagagatcaggtggtc
agtgtgtgggatcttagcagctataattgcaagatgacgatactaacaaacgaggttctt
gctgctgtttgtgcaattcattctggaactccattttatgacagtttatccttgaataag
gcagtagagagtaaaagtatgcaagaagtgtatttcttgactgctggtgaacgtggggtt
gtccgtatatgggaagtttgtttatctaagcagaagtattcagaggtaacttttagaaca
gaccaggatgacgagagaagaggcttcactgcggcacatatgctgccctctgatcaggga
ttgttgtgcataactgctgaccagcagtttcttttttactcacccttgaagcattctgag
aaaattctacatttgagccttactaagcgacttattggatacaatgaagtaatagtagat
atgaagtttgtaggtgaagatgaaaatcttcttgctgttgccaccaatattgaacaggtg
catgtttatgacatggcatcaatgtcatgttcatatgtacttgctggacattcgaaaata
gttttgtgtctcgatacctgcattggaagttctggaagcacatatattgtgactggaagc
aaggacaaagatgtcagattatgggattcagaaacaagaaagtgtgtgggggttgggatc
ggtcacctgaaagctgttggagctgttgctttttcaaagaaacagcggaactttttcgtc
agtggtagtcgtgataagacactcaaggtctggagctttgaaggccttatcagcgattct
gacaaaccttaccgtcttaagacaaaaggttctgtgggggctcataagaatgatattaac
tccgtggctatttcaccagatgacagttttgtttgtagtggttcagaggatcgcactgct
cgtctgtttaagcttccagaactagtggagatggcgtcactggtgggtcacaaacaggga
atttggtttgttgagttttctcctgttgacccttgtgttttgacagcatctaaagacaag
accataaaattatggtcagtgcgtgatcactcctgcttaaaaacatttgagggtcacaca
tctactgtgtatagagcatccttcatctcccgaggggctcagcttgtatcaactgatgcg
aatggcctactgaagctatggaacgtaaaatctattgaatgcattgcgacttatgatcag
cacgaggacaaggtatgggccttggcaattggaaggaaaacagaaatgctcgctactgga
ggcagtgatgcagttataaatctatggaatgattccactgctgctgaaaaggaagaagcc
ttccgtaaagaggaagaagaggttctgcgaggtcaagatctcgaaaatgcaatatcggat
gctgattatgccaaagctatcctactcgcctttcagcttaaaaaacctcacaagctcttg
gaactgctcttagaattgtacaggaagaacatcagaatagatcatgtgagaaatgctcta
cagtctctcgggatggaagaacttggtcgacttcttgaatatgttagagaatggaatacc
aagccaaagctgtgtcatgtcgctaactccatgctattacaggctttcagtatccatcga
cctatagacattgatgaggtgaaaggcataggggaactacttgaagggctcatcgcgtat
tctcagaggcattacaataggatagaaagcatagaaagaagcttgttcacgctagactac
actcttaacgcaatgtctgtcatcgaaccagaggacgttagtaggctaacaggtagcact
tctaaaagaaatttggataaggagactgcatctgatgtccaagaagggggcatcacagaa
acaatggaaacaaagccaaacaagagctcaaggaaacgaaagtttaggaattcgacagaa
acttgtaccgagatgactaaaactttgctagacacaaaagctacttcaactgtatag
DBGET
integrated database retrieval system
