Silene latifolia (white campion): 141622035
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Entry
141622035 CDS
T11116
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141622035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141622035
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
141622035
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Lmo2445-like_C
Motif
Other DBs
NCBI-GeneID:
141622035
NCBI-ProteinID:
XP_074294212
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Position
X:322545493..322548265
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AA seq
202 aa
AA seq
DB search
MNSRHPKVDVYPLSNYSVEIKGAKIQRRTCDAARFTHMEYKYLKYGMKTSVEGILLVHEH
KHPHVLMLKKGNAFYKLPGGKLRPGEDEIEGLKRKLSRNLAFNQPPEFQPDWQIGQEVAM
WWRPNFTKHMYPYCPPHIEKPKEERKMFIVHLSNRQDFVVPGNYDLVAVPFFDLYDNPQR
YGPVYSSIPLQLSRFDFKAMSL
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgaactcacgtcatcctaaagtcgatgtttacccattatctaactatagtgttgagatt
aagggggctaaaattcagagacgtacttgtgatgctgctcgctttacgcacatggaatac
aagtatttgaaatacggcatgaaaacgagtgtggaaggtattctactggttcacgagcac
aagcatccacacgtactgatgctcaaaaagggaaacgctttctacaaacttcctggtggc
aagctgaggccgggcgaggatgaaattgaaggcctaaaaaggaaactgtccagaaatctt
gcttttaaccaacctccagaatttcagccagattggcagataggacaggaagtggctatg
tggtggcgtccgaactttacaaaacatatgtatccttactgtccgccacatatagagaaa
ccaaaggaagagagaaagatgttcatagtgcatctgtctaatagacaagactttgtagtg
ccagggaactacgaccttgttgctgtaccattcttcgacctctatgacaatccccaaagg
tacggacccgtttattcatccattccactgcagctgtccagattcgactttaaagccatg
tctctctag
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