Silene latifolia (white campion): 141622234
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Entry
141622234 CDS
T11116
Name
(RefSeq) WD repeat-containing protein LWD1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
141622234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141622234
03036 Chromosome and associated proteins [BR:
slaf03036
]
141622234
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
141622234
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
141622234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_TEP1_2nd
WD40_Gbeta
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
141622234
NCBI-ProteinID:
XP_074294383
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Position
X:complement(2710644..2715418)
Genome browser
AA seq
350 aa
AA seq
DB search
MVVTTTADHQTVDPVSDDQQKQRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEHSQ
NRVQIVQLDDSTGEIRSDPSLSFDHPYPPTKTIFIPDKDCSKPDLLATSSDFLRVWHVTD
NNTVELKTTLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDVEKETVDTQLIA
HDKEVYDIAWGGAGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPR
YMATVIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWD
LSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSNKLQILRV
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtaacaaccaccgccgatcaccaaaccgtcgatccagtttccgacgaccaacaa
aaacaacgatccgaaatctacacatacgaagcaccatggcacatctacgccatgaactgg
tccgtccgtcgcgacaaaaaataccgtctcgccatcgcatctcttctagaacactctcaa
aaccgggttcaaatcgtccaactcgacgactcaaccggcgaaatccggtccgacccgtct
ctctcattcgaccacccgtacccgccaacaaaaaccattttcatacccgataaagactgc
tccaaacccgacctccttgccacgtcatcggatttcctccgtgtctggcacgtgaccgat
aataataccgttgaactgaaaaccacccttaacggtaataagaattcggagtattgtggg
ccgttgacttcgtttgactggaatgaagctgaaccgcgtcgtatcggtacgtcgtcgatt
gatacgacgtgtacgatatgggatgtggaaaaggagacggttgatacgcaattgattgcg
catgataaagaggtttatgatattgcttggggtggtgcgggggtttttgcttcggtttcg
gctgatgggtcggttagggttttcgatttgagggataaggaacatagtactattatttat
gaaagtagtgagcctgatactccgcttgttaggcttggttggaataaacaggatcctagg
tatatggcgacagtaataatggatagcgcaaaggtagtggtgttggatataaggtttcca
acattgcctgtggtggagttgcagagacatcaagcgagtgtcaacgcaattgcatgggct
ccacatagtagttgtcatatctgtaccgctggggatgattcccaggcactgatctgggac
ttgagttctatgggtcagcctgttgagggcgggttagacccaattttggcatatacggca
ggagcagagatagagcagcttcagtggtcgtcatcgcagccagattgggtcgccattgct
ttcagtaataagcttcagattttgagggtatga
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integrated database retrieval system
