Silene latifolia (white campion): 141622235
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Entry
141622235 CDS
T11116
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141622235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141622235
Spliceosome [BR:
slaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141622235
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Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
141622235
NCBI-ProteinID:
XP_074294384
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Position
X:complement(2724262..2730136)
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AA seq
426 aa
AA seq
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MGDLQTSGKPIDSLVEKVLCMNILSSDYFRDLFRLKTYHEVVDEIYNQVDHVEPWMTGNC
RGPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYAGDAKTLWNWFEPYV
NDDEEFSPGSNGKMTTMGVYVRDLLLGQYYFDTLFPRVPVTVLRQITSNLEKMNLPTKPS
GSIGDNSRFGSEDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRALPPPSYDDGGRD
DSRRSPSRHRSQSRDLSDRDYMDRNGDRARDRDRDRDRGRDRDGYSDRDIRDRDGDRARD
RYRDHDRDRDRRRDYDRPRYSEREGSRRDRDSDRHSDYRSRRSRSRSRSRSRSRSRQTPS
ERFDDHSSSQRDAGKEKQKASVSSNLAKLKDLYGDLSEQKGDASTGRGFKDSGSEEVIRL
GGSTWR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggggatttacaaacatcaggaaaaccaatagattcgttggtagagaaagtattatgt
atgaatatactttcttcggattattttagggatctttttcgattgaagacgtatcatgaa
gtagtcgatgaaatttacaatcaagttgatcatgtggaaccatggatgacggggaattgt
cgcggtccgtcgactgcgttttgcttattgtataaattttttacgatgaagcttactgtt
aagcaaatgcacggtttgcttaagcatccggattctccttatattcgcgctattggtttc
ctctacctgagatatgccggagatgcaaaaactctgtggaactggtttgaaccatatgtt
aacgatgacgaggaattttctcctggatctaatggaaagatgacgactatgggtgtgtat
gtgcgagatcttcttcttggacagtactattttgatactctctttcctcgtgtccctgta
actgttctccgtcagattacgtcaaatctcgaaaaaatgaacctgcccacaaagccttca
ggttcaataggagacaacagtagatttggatctgaagacactgcacgccgtcctccttct
gtcaaggctgctctttctgtttctttcggacaacgtgctccccatcgtgcatcaactaga
gactcgtctcccgttcgtcgtgccctgccccctccttcgtatgatgacggtggtagagat
gattcacgaagatcccctagtaggcatcgtagtcagagccgtgatttgtctgatagggat
tacatggataggaatggagacagagctagggatcgagaccgcgatcgggaccggggccga
gatcgggatggatatagtgaccgagatattcgtgatcgggatggagatcgggctcgggat
cgttaccgggatcatgatagagatagagatcggaggagggattatgacagacctcgatac
tcagagagggaggggagtagaagggatcgggacagtgacaggcatagtgattaccgctct
cgaagaagcaggagcagaagcaggagtaggagtagaagtcgtagccgccaaactcctagt
gagcgctttgatgatcattccagctctcagagagatgcaggcaaagaaaaacaaaaggct
agtgtgtccagcaatctggctaagctcaaagatttgtatggtgatctaagtgaacaaaaa
ggcgatgctagtacaggaagagggttcaaggacagcggctccgaagaggttatcagatta
ggtggttctacttggaggtaa
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