Silene latifolia (white campion): 141622312
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Entry
141622312 CDS
T11116
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141622312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141622312
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141622312
Spliceosome [BR:
slaf03041
]
Complex C
Other components
Step II factors
141622312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11
KH_DEAH11_1st
KH_DEAH11_2nd
Helicase_C
IBR
OB_NTP_bind
DEAD
Rcat_RNF216
AAA_22
IBR_1
zf-C3HC4_2
zf-RING_UBOX
KH_SLS1_1
WHD_HA2
NAT10_TcmA_helicase
T2SSE
AAA_19
ABC_tran
ResIII
DUF7428
AAA_assoc_C
AAA_29
Motif
Other DBs
NCBI-GeneID:
141622312
NCBI-ProteinID:
XP_074294465
LinkDB
All DBs
Position
X:3574725..3587005
Genome browser
AA seq
1779 aa
AA seq
DB search
MYVSRRYSNDTYGDRRPVTNRHNYNPNPHPHPRPRPPYRPQQRPPDPLPPPPPPPPIPEP
PKNQPANFTIELRVGVGVGFSRRNAIVLLIKQCCTTPPDTFCYRESGSLAGKLFFTEWTA
ALNAVVLIWETRLAGSHKFTPTLEFNVTVPSDVDELNSRLRPVFSRFIQASLSCEAMLKF
EAKKKGLWEEIKRISEVLRKQQPMNVYEELDYKRKRLKDEKGMILKRIEEFKGAMECIKC
YIHGHELNLEFDDRPPAFRFKPGLDWAKIYSLVMRECHRFEDGLPIYVDRRELLKLVQHQ
QIMVLVGETGSGKSTQLVQFLADSGLVGDGSIVCTQPRKIAAISLQHRVQEESHGCYEEN
YITCVQYYSSAQQFESNLIYMTDHCLLQHCMNDGKLKGISCILVDEAHERSLNTDLLLAM
LKGLLPYRPDLRLIIMSATADAYKLSNYFFDCKMVEVIGRKFPVDVKYVPCFEGTSQSVK
SSGDIVAPYVSSTVKMVTEIHRTEQEGTILAFLTSPIEVEWACESLKEPNAEPLALHGKL
PYEDQLRVFQNYPGKRKIIFATNVAETSLTIPGVKFVVDSGMMKESRFEPGSGMNVLSVC
PISKSSAIQRAGRAGRTEPGRCYRLYSQDNFRKMDMQQKPEICRVHLGVAVLKIVAMGVK
NVREFNFIDIPDHDAIDKAVQNLLQLGAVTLKNGDLELTDDGSKLVKLGIEPRLGKLILC
CLSERLGREGLVLAALMPNHSSIFCRVGNQSDKLKSDCLKVRFCHADGDLFTLLSVFKAW
ESERPDWRNGWCWENSINAKSMRRCYDTVSELENCLKNELHIVVPSYWHWTPDEATVHHK
NLKKAILASLAENVAMFSGCDRLGYVVALTGKHVQLHPSCSLLMFSHKADWVVFGEVLDA
SCQYLVCVTAFDREFLSTITPPPLFDPCGIKKQKLQLSKLSGLGKTILKKFCGQSNNGLL
CHVSRIRENCGDDRIRIEVDIDNNTIQVFSGAYDVEKVSKHVKDALDCERRWLLNECMER
CLYHGSPSAVPPVALFGSGAEIKHLELDKRCLTVDVFHSNASAVDDKELLLHIDRHTSGI
DVFHPNVSAVDDKELLLHTERHTSGICSFHKYKGQEKWGSITFLTPGAAIKATELNDIEF
YGGKIRINLSRATFGMNRAFSFPVVRAKLFWPRRLSKGFGIVKCDIHDVGFVIRDLSDLL
IGKRYIRCEAGKKSPDSVVITGIDRLASETEILQALRSATDRTILDFFLVREDAVDNPPC
HACEEVLFKELSAFMPKGSPQINFCRVRVFSPDPKHAFMKALVTFDGRLYFEAAKALEQI
EGTTLPGFQPWQKIQCQRLFHTSVSCPSFVYSVIKSELDLMVTRFNRQKGAKCIINKNNN
GSVWVKISATATKTVAELRSSLEELMKGRTILHASLTPDVLQVLFSRDGIALMRALERAM
EVSVSFDRQRLNLTLFGPSEKVLLAEERFIRSIVNLHEERRQVIHLRGVGLPHDLMREVV
RRFGHDLRGLKDKVPDAEFSLDTRRHVIFSNGSEKAKQKAEEIIIEIAQASGQCPAANND
NNNNGAEMCPICFCKVENAYRLESCSHVFCKSCLVKQCECAIRNKDSFPLNCLHEGCKLP
ILLVDLKELLSSKQLDELFEASLAAFVSSSCGAYRFCPSPDCPNVYKVADADKPAEPFSC
GACYAETCTKCHLEYHPNLSCDKYKEYKEDPDASLNEWTQGKDEFVKKCPGCGYTIEKAE
GCNHVECKCGRHLCWVCLEHFLTSEDCYSHLRTLHQGIT
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atgtatgtcagcagacgctattctaacgacacctacggtgaccgtcgtccggtcaccaac
cgtcacaactataacccgaacccgcacccgcacccgcgtccgcgccctccgtatcgcccc
caacaacgacctcctgacccactcccacccccacccccacccccacctataccggaaccc
ccaaaaaaccaacccgccaatttcaccattgaacttcgagtcggagtcggagtcggtttt
tctcgtagaaatgcaattgtgttgttaattaaacaatgctgcactactccacctgacaca
ttttgctatagggaatccggttcacttgctggaaagctgttttttactgaatggaccgcg
gctctaaacgctgtcgttttgatttgggaaactcgtctcgctgggtcacataagtttacc
cctaccttagaattcaatgttactgtcccatctgacgtggatgagcttaattcacggctt
agaccggttttctcccggtttattcaggcttcgctttcctgtgaggcgatgctcaagttt
gaggcgaaaaaaaagggtttgtgggaggagattaagcggatttccgaggttttgaggaag
caacagcctatgaatgtctatgaggagcttgattataagcgaaagcggttgaaagatgaa
aagggtatgattttgaagaggattgaggagtttaagggtgctatggagtgtatcaagtgt
tatattcacggtcatgagcttaatctagagtttgatgatcggcctcctgcgtttcggttt
aagccggggttggattgggccaaaatttatagcttggtcatgagggagtgtcatagattt
gaggatggtttgcctatctatgtcgaccgtcgtgaacttctcaaacttgtccaacatcag
cagattatggtattggtgggagagactggatcaggaaagagtactcagctagtgcagttt
cttgctgactcaggtctagttggcgatggttctattgtctgcactcagccaagaaagata
gctgcaatttcactacaacacagagtgcaagaagaaagtcatgggtgctatgaagaaaac
tatatcacctgtgtccaatactattcctctgctcagcagttcgagagtaatctaatatat
atgacggatcactgtttgctgcaacactgtatgaatgacgggaagctcaaggggatttcc
tgtattcttgtggatgaagctcatgaaagaagcttaaatactgacctccttttagcaatg
ctcaagggtttgcttccttacaggcctgacctgaggcttattatcatgtctgcgacagct
gatgcctataaactttcaaattatttctttgactgtaaaatggttgaggtgattggcaga
aaatttccagtagatgtgaaatatgtgccgtgctttgaaggtacatctcagtctgtgaag
tcgtctggtgatatcgtagccccttatgtgtctagcactgtgaagatggttactgagata
catagaacagagcaagaagggacaattctggcatttttgacttctccaatagaagttgaa
tgggcttgtgaaagtcttaaagagcccaatgctgagcctttggctttgcacggcaaactt
ccgtatgaggatcagttgcgtgtcttccaaaattaccctggaaaaagaaaaatcatattt
gcgacaaatgtagccgaaacttccttgacaatccctggggtcaaatttgttgttgattct
ggcatgatgaaagagagtaggtttgagcctggctctgggatgaatgttttgagtgtctgc
ccgatcagcaagagttctgctattcaacgagctggccgtgctgggagaactgaaccaggg
cgctgttatcggctgtattcacaagataattttcgtaagatggatatgcagcagaaacct
gagatctgtagagttcatcttggtgttgctgtcttgaaaattgttgcaatgggcgtaaaa
aatgtaagggagtttaattttattgatatccctgaccatgatgcaattgataaggctgtc
cagaatcttctacagctgggagctgttactttgaaaaatggtgacctggaattgactgat
gatgggagcaagctagtgaaacttggcattgagcctcgcttgggtaaattgatactttgc
tgcttgagtgagcgcctgggcagagaaggtcttgttcttgctgctcttatgccaaaccat
agcagcatattttgtcgggttggtaatcaatcagataagctgaagtcagattgcctcaag
gtgcgtttctgtcatgctgacggtgacctgtttactcttctctctgttttcaaagcatgg
gagagtgagcgtccagattggaggaatggatggtgttgggagaacagtatcaatgccaaa
tcaatgcgcaggtgctatgatactgtttctgaattggagaactgcctcaaaaatgaactc
cacattgttgtaccaagctactggcattggacacctgacgaagcaacagtgcatcacaaa
aatctgaaaaaggccatacttgcttctcttgctgaaaatgtcgcaatgttttctggctgc
gataggctcggatatgtggtggcattgactggaaaacacgtccagcttcatccttcatgt
tctctgctaatgtttagtcataaggctgattgggttgtctttggtgaagttttagatgca
tcttgtcaatatctggtatgcgtgactgcgtttgaccgagagttcttgtctacaattact
cctcctccgctgtttgacccctgtggaatcaaaaagcaaaagctacaattaagtaagttg
tctggtttggggaagactattcttaagaagttttgtgggcagtcaaataatggtctgctt
tgtcatgtgtcaagaatcagggaaaactgtggggatgacagaattagaatagaagttgat
attgacaataatacaatccaagtattctccggtgcatatgatgttgaaaaggtttcgaaa
catgtcaaggatgctctggattgtgaaagaaggtggctgttgaatgagtgcatggagaga
tgcttgtatcatggcagtcctagtgcagtgccacctgtagcattatttggatcgggagct
gaaataaaacatctggagttagacaagagatgcttgactgtcgatgtatttcattccaat
gcaagtgcagttgatgataaggagcttctgttacacatcgaccgtcatacctcagggatt
gatgtatttcatcctaatgtaagtgcagttgatgataaggaacttctgttacacaccgaa
cgtcatacctcagggatttgctcttttcacaaatataaaggccaagagaaatggggtagc
ataacatttctgacaccaggtgctgctattaaggcgacggagttgaatgatattgagttt
tatggtggtaagataagaataaatctttcaagggctaccttcggaatgaatcgggcattt
tcatttcctgttgtcagggcaaaattgttttggccacgtaggctcagtaaaggatttggg
attgttaaatgcgatattcacgatgttggattcgtaatcagagacctttctgatctactg
attggcaaaaggtacattcgctgtgaagctggcaaaaagtctccagattccgttgtcata
actggaattgatcggctagcttctgaaactgaaattttacaagcattgaggagtgctaca
gatcgtacaatcctggatttctttttggtcagagaagatgctgttgataatcctccttgt
catgcttgtgaagaagttttgtttaaagaattatctgcctttatgccaaaaggaagccct
cagataaatttttgcagagtccgtgtcttctctcctgatcccaagcatgcttttatgaaa
gctttagtcacatttgatggaaggctttattttgaggcagcaaaagcactggagcagatt
gaaggaacaactttacctggttttcaaccctggcagaaaatacaatgccagcggttattt
catacatcagtgtcctgcccttcatttgtctactctgtgataaagagtgagcttgattta
atggttaccagattcaatcgtcaaaaaggtgcaaaatgcattatcaacaaaaataacaac
gggtctgtttgggtaaagatatcagctacagcgacaaaaactgttgctgagttaagatca
tctctggaagagctgatgaaagggaggacaattttgcatgccagtctcactccagatgta
ttacaagttctgttttctagagatggcattgcattgatgagggcacttgagcgagcgatg
gaagtgtcagtgtcttttgataggcagagactaaatttgacattatttgggccatctgag
aaagtactattggcagaagagaggtttattcggtctattgttaaccttcatgaagagagg
cgacaagtgatccatctccgtggtgttggtttaccccatgacctgatgagagaagttgta
aggagatttgggcatgacctccgtggtttgaaagacaaggtaccagatgcagagttcagt
ttagacacacgacgtcatgtcattttctcgaatggtagtgaaaaggcaaagcagaaagct
gaagagatcataattgagattgctcaagcaagtggacaatgtcctgcagctaataatgat
aataataataatggtgcagagatgtgcccaatatgcttctgtaaagtggaaaatgcgtat
cggctagaaagctgctcgcatgttttctgcaaatcatgcttagtgaagcaatgtgagtgt
gcgatacgaaacaaagacagtttcccattaaactgtcttcacgaaggctgcaagcttcct
attttgcttgtagacttgaaggaattgctgtctagtaaacagctggatgagctgtttgag
gcatccctggcggcctttgtttcatcaagttgtggggcttacagattctgcccttcacca
gattgccctaatgtttataaggtggcggacgctgataagcctgcagagcccttttcatgt
ggggcgtgttacgcagagacttgtacaaagtgtcacctagaataccaccctaatttatca
tgcgacaagtacaaggaatacaaggaagatccagacgcatccttgaacgaatggacacaa
gggaaggatgaatttgtgaaaaaatgccccggctgtgggtatacaatagagaaagcggag
ggatgcaaccatgtcgagtgcaagtgcgggaggcatctctgttgggtctgtttggagcac
ttcctcaccagtgaagactgttactctcacttgcgcacccttcatcaggggatcacatag
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