Silene latifolia (white campion): 141622359
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Entry
141622359 CDS
T11116
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
141622359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slaf04131
]
141622359
Membrane trafficking [BR:
slaf04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
141622359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
DUF6664
Motif
Other DBs
NCBI-GeneID:
141622359
NCBI-ProteinID:
XP_074294501
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Position
X:complement(4406200..4416118)
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AA seq
790 aa
AA seq
DB search
MIADGVEDEEKYLAAGIAGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKY
YALYMRAFDELRKLEMFFYEEMKRGCSIIELYELVQHAGNILPRLYLLCTVGCVYIKSKE
APAKDILKDLVEMCRGIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDAETVTDAVEFVI
QNFTEMNKLWVRMRHQGPAREKDRREKERSELRDLVGKNLHVLSQIEGVDLDMYKDTVLP
RILEQVVNCKDDLAQYYLMDCMIQVFPDEYHLQTLDILLGACPQLQPTVDIKSVLSSLME
RLSNYAATSPEVLPEFLQVDAFSRLNSAIGKVIEAQPDMPVVAVVTLYSSLLTFTLHVHP
DRLDYADQVLGSCVSKLSVVGKLDDSNATKQIVKLLSAPLDKYNSVITALKLSNYPRVME
FLDNETNKVMAKIIIRSIMKNETYISVGDKVEALFELIKGLIKDTDGTFDDEDDEEDFKE
EQNAVARLVQMLHNDDAEEMFNIITIVHKHFLAGGVKRLPFTVPPLVFSSLKFIRRLQSQ
DVTKNGDEADAKPKKIFQLLNQLIEALLKVPAPELALRLYLQCAEAANDSDLEPVACEFF
TQAYILYEEEISDSREQVNALYLIIGTLQRMHIFGVENRDTLTHKATGYAAKLLKKPDQC
RAVYACSHLFWADDKDGVRDGERVLLCLKRALKIANAAQQMANATRGKGGSVMLFIEILN
KYLYFFEKGNNQITVNAIQDLMELITSEMQGDNATSDPAAEAFFNSSLRYIQFQKQKGGA
VSERYEAVKA
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcagacggcgtcgaagacgaagagaaatatctcgctgctggaatcgcaggtctt
caacaaaatgccttttacatgcatcgcgcattggattcgaataatctcaaagatgcgttg
aagtattcggcacagatgttgtccgagcttcggacttcgaaactttcgccgcataagtac
tatgctctttatatgcgagcgtttgatgaattgaggaaattagagatgttcttttatgag
gaaatgaagcgaggttgttcgattattgagctttatgagcttgtacagcatgccggcaac
attttacctcgattgtatcttctctgcacagtaggatgtgtttacataaaatcgaaagag
gctcctgcaaaagatatccttaaggatttggttgaaatgtgccgtggcatccaacatcct
ctacgagggctcttcttaaggagttacctttcgcaagtcagtagggataagctgcctgat
attggttcggagtatgaaggagatgccgaaactgtcacggacgcagttgagtttgtgata
cagaattttactgagatgaataaactttgggtgcggatgcgacatcagggacctgctcgt
gagaaggatagaagggaaaaagaaaggagtgagcttcgggatcttgttggaaagaatctg
catgtcctcagtcagattgagggggttgatcttgacatgtataaagatactgttcttcct
agaatcctggaacaggtggtcaattgtaaggacgaccttgcacaatattatctgatggac
tgtatgattcaagtatttcctgatgaatatcacttgcaaactcttgatatattgttgggc
gcttgtccacagcttcagccaacagttgatatcaagtcagttctctctagcttgatggaa
aggctctcaaattatgctgccacgagtccagaagtattaccggaattcttgcaagtggat
gccttctctagactaaacagtgcgattgggaaggtcatagaagcacaacccgatatgccc
gttgttgctgttgtaactttgtattcatcgcttctcacgttcaccttgcatgtccatcct
gacaggcttgattatgctgatcaagttttgggatcctgtgtcagtaagctttccgttgtt
gggaaacttgatgatagcaatgcaactaagcaaattgttaaacttctaagtgctccgttg
gataagtataatagtgttattactgccttgaagctctctaactatcccagggtgatggaa
tttcttgacaatgaaacgaataaggtcatggcaaaaataattattcgtagcattatgaaa
aacgagacgtatatatccgtgggtgataaggttgaggcattatttgaattgataaagggg
ctgatcaaagacacagatggtacatttgacgatgaggatgacgaagaggacttcaaggag
gagcaaaatgctgtagcacgccttgtccaaatgctacacaatgatgatgcagaagagatg
ttcaatatcattactatagttcataaacatttcttggccggaggagtgaaacgtctacca
tttactgttccaccacttgttttttcttctcttaagttcattaggaggctccagtcccaa
gatgtaactaaaaatggagatgaagcggatgctaaaccaaagaagattttccagttgttg
aaccagcttattgaggctcttttgaaagttccagctcctgagcttgcattacgattgtac
ctacaatgtgccgaggctgcaaacgactctgatctagagcctgtcgcctgtgaattcttt
actcaagcatacatattatatgaagaagaaatttcggactccagagaacaggttaatgct
ttgtacctaattatagggacacttcaaaggatgcatatctttggtgttgagaacagggat
actctgacgcacaaagccactgggtacgcggcaaagcttttgaagaaacccgatcaatgt
agggcagtctatgcgtgctctcatctcttttgggctgatgataaggatggtgtaagggat
ggagagagggttttgctttgcttgaagcgagctttaaaaattgcaaatgctgcacaacaa
atggctaatgctacacgtggtaaaggtggatcagttatgctgttcattgaaatcctcaac
aagtatctctacttttttgagaaggggaacaaccagatcaccgtcaatgcaatccaagac
ctgatggaactaattacttcggagatgcaaggtgataatgccacgtcagatccagctgct
gaagctttctttaacagctctttgcggtacatccagttccagaaacagaaaggaggtgcc
gttagtgagagatatgaagctgtcaaagcgtga
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