Silene latifolia (white campion): 141622438
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Entry
141622438 CDS
T11116
Name
(RefSeq) sister chromatid cohesion protein SCC2-like isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
slaf03036
]
141622438
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
141622438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
PHD_4
INTS1_R4
zf-RING_2
Nop52
API5
Motif
Other DBs
NCBI-GeneID:
141622438
NCBI-ProteinID:
XP_074294573
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Position
X:complement(5222703..5242371)
Genome browser
AA seq
1800 aa
AA seq
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MNNNQNEWSQRGITLSNTLHSEVAPCLPLPSLPAFTGSADEELRLFDGRVTRSHNRRDVL
AQASKIADLLRDTDVSYLNLKSDVASDAISVNERSELCDEVLRCDHDAFECSRPGSFEER
ISSAVPDRNSNQKIEYSSNQSQRDHIETRHRQQSEAVDIKLQDVPLPSKKARAKKKGSQG
VSTSAPMDPGEHQDSVVGRFCDVLEELCSRAEIPGEELEEAEWLQLPTSDIRTILKEVMS
IRTQNMLHLVPVNVLVRLLKVLDNQIHRAEGLSIDECENSDSDVSLIFCALESIHAALAV
MVYNDMPKQLYEEEIIERILEFTRRQIMDIMSACDPSYRALHRPGDNGIAEGEDDPDDGA
EYGSASKRRRTTKSLKSKRTSTNRISTAVNTVFQKLCTVLGLLKDLLFIERLSDSCILQL
VKTCLATLLVDNIQLLQMKAMGLINGIFYSYTQHRSHVVDEVVQLLWNLPFSKRAARAYH
LPDEEQKQIQMITALLLQLVSHSANLPENLRQPSSNRAIFETTIESGYLIKCTEAATETC
VSFWTHVLQRLTTVKSQDVSEVKVIMENLVLDLLTTLNLPEYPAASLILEVLCVLLLQNA
GPKSKDISIRAMAIDILGSIAARLKHDSACCQKENAWIVQEILGRENVNEGEQADTCSVC
LDGEMEKALLICHGCQRLFHPECMGVREHDIATRGWHCPFCLCRKQLLVLHSYCKSQCKD
DKTNHVHSPTTESDSNMEIVQQMLLNYLEDNGSSDDLHLFARWFYLCLWYKDDSQSQQEL
SYRLARLKSKAVIRDSGALSSVLSRDFIKRINLCLGQHNSFSRGFDTILAMLLVSLRENS
PVIRAKALRSVSIIVEADPDVLRDKRVQSAVEGRFCDSAISVREAALELVGRHIASHPDV
GVQYFDKVAERIKDTGVSVRKRAIKIIRDMCTSNADFAETTRACIEIISRISDEESSIQD
LVCRTFYEFWFEEPSGKQYFGDDSSVPLEMTRKTEQIVDMLKKMPNHQALVTVIKRNLAL
DFLPQTKGTGINSLALATVRKRCELMCKFLLERILQVEEMNVEEGEIRILPYITVLHAFC
LVDPSLCAPSSNPSQFVVTLQPYLKNQVDNRVVAQLLECIIFVIDAVLPLLRKLPPSVVD
ELEQDLKQMIVRHSFLTVVHACIKCLCSLNKIAGKGGRLIQFLIQVFVKRLDALGIDNKQ
QVGRSLFCLGLLIRYGNSLLIASDGSIDISSKLNLFKKYLLADDFGIKVRALQALGFILI
ARPEFMLEKEVGKILEATLSSSSDTRLKLQVLQNIYDYLLEAESQLGSDTVGDNVVDNSR
DGSSVVPEAAGAGDTNICGGIVQLYWESILERCLDTNEQVRQSGLKIVEVALRQGLVHPI
TCVPYLIALETDPLEVNSKLAHHLLMNMNEKYPAFFESRLGDGLQLSFNFIRSMKTNSVN
SNSKLQYKVAENMKGKSEDASFVNARLGVSRIYKLIRANRVARNKFMSSVIRKFDNPSWS
ATVVHFLMYCTEILSLLPFTAPDEPLYLVYTINRVIQVRSGTLEASLKAFSTHFSQRNTQ
KVATENGSWQQLAAAQLSVNSLSLELNGTFQLPGEGHFASHSMETDENMHCRSFRFTEDD
QQRIQAVCIAATALQLLLKLKRHLKVVYSLDDVRCQAFSPTEPPKAGESLSRQNIPFGIG
DMSTDLPSTPEELHQRYQEFKNALREDTVDYSAYTANIKRKRPTPSKRGGRASRAMVRDD
EDSDVEDERKRTPSKRGVKASRAINRDDEDSDFEDEDCTGGRRNYGARQSNGVRSSRRLL
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaatcaaaatgaatggagtcaacgaggaatcacactatccaatacacttcac
tcggaagtcgcaccttgcttacctcttccgtctcttccggcgtttactggttccgctgac
gaagaacttcgtcttttcgatggtcgcgttacgcgttcgcataatcgtcgtgatgttctt
gctcaagctagcaagattgctgatcttcttcgtgataccgatgtctcttacttgaacctg
aagagtgacgtggcttcagatgcaatttcggtaaatgagcggtcggagctctgtgatgag
gtccttcgttgtgatcatgatgcttttgagtgttcacgtccaggttcttttgaagagcgg
atctctagtgcagttcctgataggaacagtaatcagaaaattgaatatagttccaatcaa
tcgcagagagaccatatagaaactcgccatcgtcaacaatctgaagcagtagatataaaa
ttacaggatgtacctttaccatctaaaaaggcccgggccaagaaaaaaggaagtcagggg
gtgtcaacttctgcgccgatggatcctggtgaacatcaggattctgttgttgggcgattc
tgtgacgttttggaggaattgtgtagcagggctgaaattccaggtgaagagctggaggag
gcagagtggttacaattgcctacttctgacattcgaacaattttgaaggaggtgatgtcc
atcagaacgcagaatatgcttcatctggttcctgtaaatgtacttgtcagactattgaaa
gttctagataatcagattcatcgagctgaagggctatctatagatgaatgtgaaaattca
gattcagatgtttctttgattttttgtgctttggagtcaatccatgctgcacttgctgtg
atggtttacaatgacatgccaaaacaactgtatgaggaagagattattgaacgaattctg
gagttcaccagacgtcagatcatggacataatgtcagcttgtgatccttcttatcgtgct
ttgcatcgacctggtgacaatggaattgctgaaggggaagacgacccagatgatggtgct
gagtatggttcagctagcaaaaggcggcgtacaactaagagtttaaaaagcaaaaggaca
tcaacaaacaggatatcgactgctgtgaacacagtatttcagaagctttgcactgtgctg
ggtctcttgaaggacctgctgtttatagaacgcctgtcagacagttgcatcttgcagcta
gtgaagacgtgcttggcgacattacttgttgataatatccaactcttgcaaatgaaagct
atgggcctcataaatgggattttctattcatacacacaacataggagtcatgtcgtcgat
gaagttgttcaacttctctggaatctaccattctctaaacgagctgctagagcttatcat
ttacctgatgaagaacagaaacagatccaaatgattactgccttattgcttcaattggta
tcccacagtgctaaccttcctgaaaatttgagacaaccatcaagtaatcgtgcaattttt
gaaacaacaattgaatcaggttacctgataaaatgtactgaggcagcaacagagacatgt
gtttcattctggacacatgttcttcagcggcttacaactgttaaaagtcaagatgtatct
gaggtgaaggtgataatggagaatcttgttctggatcttttgactaccttgaatctgccg
gagtaccctgctgcatctctcattttagaagttctctgtgtcttactgcttcagaatgca
ggcccaaagtcgaaagatatatccatacgtgctatggcaattgatatactcggttcaatt
gctgcacgattaaagcacgactctgcttgttgccaaaaagagaatgcgtggattgtgcag
gagattttaggtagggaaaacgtcaatgagggtgaacaagcagatacctgttctgtttgt
ttggatggtgaaatggaaaaagctttgttgatatgtcatggctgtcagaggttgtttcat
cctgaatgtatgggtgtgagagaacatgacattgcaacacgtggttggcactgccctttc
tgtctctgtagaaaacaacttttagtattacattcgtattgcaaatcacagtgcaaggat
gacaagacaaatcatgttcattcaccaactaccgagtcagattcaaatatggagattgtt
cagcagatgcttctaaattacctggaggataatggttcttctgatgatcttcatttgttt
gctcgttggttttatctttgtctgtggtacaaagatgattcgcaatcacaacaagagctc
agctatcgccttgccaggttaaagtcgaaagcagttatccgggattcaggggccttgtca
tcagtgctgtcaagagatttcattaaaaggataaacttgtgtttagggcagcataattca
ttctccagaggatttgatacgatacttgccatgcttctggttagtctacgtgagaactcg
cctgtaattagggccaaggcattgcgatcagtcagtataattgtagaagctgatccagat
gttctacgtgataaacgtgtccaatcagcagttgaaggacggttttgtgattctgcgata
tctgtcagagaagctgctcttgaactagttggaaggcatattgcgtcacatccagatgtt
ggtgtgcaatactttgacaaggttgccgagagaatcaaagatactggtgtgagtgttcga
aaacgagcgatcaagattatcagagacatgtgtacatcaaatgctgattttgcagaaaca
acccgtgcatgcattgagattatttctcgtatcagtgatgaagagtcaagtattcaggac
cttgtatgtaggacattttacgagttctggtttgaagaaccttctgggaaacagtatttt
ggagatgatagttcagtgccattggagatgacaaggaagactgaacagatagttgacatg
ttgaagaagatgcctaatcatcaagctcttgtcactgttatcaaacgaaacttggctctt
gattttttgcctcagacaaaaggaacagggattaattctctggccctggcaacagtacgg
aagcggtgtgaactaatgtgcaaatttttgctggaaagaattttgcaggtagaggaaatg
aatgtagaggaaggagagattcggatcctaccctacattacagtcttacatgctttttgt
cttgtggacccgtcactttgtgctccttcttccaacccttctcagtttgtggttacactg
caaccatatctcaagaaccaggttgacaatcgagttgttgcacaattattggagtgtatc
atctttgtaattgatgctgttcttcctttactccgaaagctgcctccaagtgttgttgac
gagcttgaacaagatttgaagcagatgattgtccgtcattccttcctaacagttgtacat
gcttgcatcaagtgcctctgcagtttgaataaaattgcagggaaaggtggaaggttgatt
cagtttcttattcaagtttttgttaaacgtttggatgctcttggtattgataacaaacag
caagtgggacgctctttgttttgccttgggcttcttatccgttacggtaactcactattg
attgcatccgatggaagcattgatatttctagcaaactcaatttgtttaagaagtatctt
cttgcggatgattttggcataaaggtcagagctctgcaggcattgggattcattttgatt
gctagaccggaatttatgttggaaaaggaggttggaaaaattttagaggctacattgtct
tctagctctgatactcgcctcaagctacaagttctgcaaaatatatatgattatctcctg
gaggcagaaagtcaattgggttcagatacagtaggagataatgtggttgataactcccga
gatggtagctctgttgtgcctgaggctgccggtgctggtgatactaacatttgtggggga
atagtacaattgtattgggaaagtatcttggagagatgcttggatactaatgaacaagtt
cggcaatctggccttaagattgtggaagttgctctacgccaaggccttgttcatccaatc
acatgtgtcccgtacctaattgcacttgagacagatcccttggaggtgaattcgaagctg
gcacatcatctgctgatgaatatgaatgagaagtatccagccttctttgagagtcgtctg
ggtgatggcctccaactgtcatttaactttattcgatcaatgaaaacgaattctgtgaat
tcaaactcaaaattgcaatacaaggtagctgaaaatatgaagggaaaatctgaggatgcg
tcatttgtaaatgcaaggcttggggtttctcggatttacaagctaattcgtgcaaatcgt
gtggctagaaataagtttatgtcctcggtcattcgcaaatttgataatcctagctggagt
gcaacggttgtccatttcttaatgtactgcacagagattctttctttgcttcctttcacg
gcacctgatgagcctctttacttagtttacactataaatcgagttatacaagttagatcg
gggacattggaagcgagtcttaaagcttttagcactcatttctcccagcgaaatacccag
aaggttgcaactgaaaatgggagctggcagcagttggccgctgctcaactctctgttaat
tcattatctttggagttaaatggtacttttcaattgccgggggaaggtcattttgcttct
cactccatggaaacagatgaaaatatgcattgcagaagcttcagattcacagaagatgat
caacagaggatacaggctgtctgtatagctgcaacggctcttcagctcctcttgaagtta
aagaggcacctgaaggttgtgtacagtttagatgatgttcgatgccaagctttttctcct
actgagcctcccaaagctggtgaatccctctcccggcagaatattccttttggcattggc
gacatgtcgactgatttaccgtctactcctgaagagttgcaccagagatatcaggagttc
aagaatgctttaagggaagataccgtcgattactcagcctacacagcaaacattaagagg
aagcgccctacaccctccaagagaggtggtagggccagccgagcaatggtcagggatgac
gaggactctgatgttgaagacgagaggaagcgtacaccctccaaaagaggtgtaaaggcc
agccgagcaattaacagggatgatgaagactctgattttgaagacgaggactgtacaggt
ggacggagaaattacggtgctcgacagagcaacggtgtcagatcaagtaggaggttgttg
tag
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