Silene latifolia (white campion): 141623594
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Entry
141623594 CDS
T11116
Name
(RefSeq) LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141623594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141623594
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141623594
Spliceosome [BR:
slaf03041
]
Complex C
Other components
Step II factors
141623594
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
DEAD
HA2_C
AAA_22
NAT10_TcmA_helicase
DUF7490
Motif
Other DBs
NCBI-GeneID:
141623594
NCBI-ProteinID:
XP_074295803
LinkDB
All DBs
Position
X:128079627..128086560
Genome browser
AA seq
706 aa
AA seq
DB search
MANLPILQFEDTIIKTVENNPVTVVICETSSGKSTQLSQMLFRRVFANSGIIAVTQPRRV
AAVSVARHVAQEMNVHLGDEVGYAIRFEDRTSEKTKIKYLTVGVLLRESLSNPELNAYFV
VILDEAHKRSLNMDILMGLVKRLVTMRDKLKFRVLITSSTLEGEKVSAFFDGCPVLNVPG
NLFPVEVFYSDERPKSYVEAALKKAVDIHVNEPEGDIIRAGXLNMLIFMTGQEDIEKMVK
KLEDKVRGLEEGSVMDAVIYPLHGSLPPEFQVRVFSPPSPNCRRFIVATNIVETSLTVDG
VVYIIDTGYVKQRQYNPSTGMYSLDVMQISRVXANQRAGRTRPGKCYRLYPFKVYSEEFM
EAAVPEIQRTSLAGSVLYLRSLNLPDIDILKFDFLDPPSNESLCDALRQLYLIDGIDDDG
NITSAGRTMAELPLEPSLSRTLMEANDNGSLSQALTVAAMLSAETSLLPSYDKGADKKRN
HNPMNLPDGGGLGDHTQLLQIYELWDETGYDVEWCKEHALQLRGMTFVKDVKGQLCQIML
KVAKCSMEVRGSHSRRERKLNYQNLRKALAVVYANQLAERMIRHNGYKTLGMKSQLVQLH
PSSVLQPDKDAMFPYYVVYHELITTSKAFMRNVCAVQREWIMPVFKKLENLNVNRLSGKT
SHPDDRLQEKPEDVITKVNDDADSSVDRESKIQAACDRFLARKVKK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctccctatccttcagtttgaagacacaatcatcaaaacagtcgaaaataat
ccagtcacagtagtaatctgcgagacaagttccggtaaaagcacacaactttctcaaatg
cttttccggcgagttttcgcaaattcaggcatcatcgcggtcactcaacctcgtcgtgtc
gccgccgtctctgtcgcccgccacgtcgcgcaagaaatgaacgtccatcttggagacgaa
gtagggtacgcaattcgatttgaagatcgaacttccgaaaaaactaagattaagtactta
actgttggcgttttacttcgtgaaagcttatctaaccctgaattgaacgcttattttgtt
gtaattctagatgaggcgcataagcggagcttgaatatggatattttgatgggtttagta
aaaagattggtgactatgagggataaattgaagtttcgggttctaattacgtcgtcgact
ttagaaggggagaaggtttcggcgttttttgatggatgtccggtgcttaatgtgcctggg
aatttgtttccggtggaggtcttttatagtgatgagaggccgaagagttatgtcgaggca
gctcttaaaaaagcggttgatattcacgtcaatgagccggagggtgatattattagggcc
ggctaattaaatatgctgatattcatgactggtcaggaggatattgaaaagatggtgaag
aaattggaggataaggttcgaggtctcgaggagggatctgttatggatgctgtgatttat
ccgcttcatggttcgttgccacctgaatttcaggtacgtgtgtttagtcctccctctcca
aactgtaggcggtttatagttgcgactaatattgttgagacctctttgacagttgatggt
gtggtttatattattgatacgggctatgttaagcaaagacagtataatccctcgactgga
atgtattcgttagatgttatgcaaattagtagggtgtaggctaatcagcgtgctgggaga
actcgtcctgggaaatgctatcgtttgtacccttttaaggtttatagtgaggagtttatg
gaagctgcggttcctgagatacagcggacgtctcttgctgggagtgttctttatttgagg
tcattaaatcttcctgatattgatattcttaagtttgattttctggaccctccctctaac
gagtcgttatgcgatgctttgaggcagttgtatttgattgatgggattgatgatgatggg
aatataactagtgctggtcgaactatggctgagctcccactggagccatctttgtctagg
accttgatggaggcaaacgataatgggagcttgtctcaagctttaacagttgctgcaatg
ttatcggctgaaacttcattgcttcctagttatgacaagggggcagacaagaaaaggaac
cataacccaatgaatctgcctgatggaggtggtttgggtgatcacacacagttactgcag
atttatgaattgtgggatgaaaccggttatgatgttgaatggtgcaaagagcatgcgcta
caattgcgaggaatgacatttgtgaaggatgtcaagggacaattatgtcaaataatgctg
aaggtggccaagtgttcaatggaagttcgaggaagtcatagccgtagagaaagaaaactc
aattaccagaacttgagaaaggcattagctgtggtttatgctaatcagcttgcagaaagg
atgattcggcataatggatacaagacacttggcatgaagtctcagcttgttcagctacat
ccgtcctctgtcttgcaaccagataaagatgcaatgtttccatattacgtggtttatcat
gagctaattacgacttctaaagcttttatgcgaaacgtatgtgctgtacagagggaatgg
attatgcctgtttttaagaagcttgagaatctaaatgtcaacaggctgagtggcaagact
agtcatccagatgaccgtctgcaagagaaacctgaagatgtaatcacaaaggtaaatgat
gatgctgattctagtgttgaccgtgaaagtaaaattcaggcagcatgtgaccgtttcctt
gctcgtaaagtgaagaagtag
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