Silene latifolia (white campion): 141626506
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Entry
141626506 CDS
T11116
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141626506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slaf03009
]
141626506
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
141626506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Utp13
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_Nup120_160
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
WD_LRWD1
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_VPS8
WD40_RFWD3
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_NUP159_NUP214
WD40_like
Ge1_WD40
Nbas_N
Beta-prop_RIG_1st
Beta-prop_DCAF12
Cytochrom_D1
WDR54
SGL
Tricorn_2nd
Beta-prop_NOL10_N
Utp12
WD40_CFAP43
Motif
Other DBs
NCBI-GeneID:
141626506
NCBI-ProteinID:
XP_074296375
LinkDB
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Position
Y:137908881..137914608
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AA seq
878 aa
AA seq
DB search
MTDVTASLKKSYKCTKFLEQFYSGGPVAVSTDGSFMACACNNTIKIVNCVTANASIKATL
EGDSEAVTALAISPDNAFLFSASHSCQIMVWDLSSLTCVRSWKNIGEGPVLAMACDASGG
MLATVGADRKVLVWDVDAGYCTHYFKGHTGIVNCILFHPDPNNLILFSASDDTTVRAWDL
VAGKSKQCAATMKNHASAVVTLAISEDRRFLFSAGRDQVVSVWDLSSYTCKMTILTNEVL
AAVCAIHSGTPFYDSLSLNKLGQSKSIQEVYFLTAGERGIVRIWEVCLSKKKYSEVVFKT
DQDDQRRGFTAAHMLPSDQGLLCITADQQFLFYSPLKHSEKILHLSLTKRLIGYNEVIVD
MKFVGEDENLLAVATNIEQVHVYDMASMSCSYVLAGHSKIVLCLDTFIGSSGSTYIVTGS
KDKDVRLWDTETRKCVGVGIGHLKGVGAVAFSKKQRNFFVSGSRDKTLKVWSFEGLISDS
DKPYRLKTKGSVGAHKNDINSVAISPDDSFVCSGSEDRTARLFKLPELVEVASLVGHKQG
IWFVEFSPVDPCVLTASKDKTIKLWSVRDHSCLKTFEGHTSTVYRASFISQGAQLVSTDA
NGILKLWNVKSIECIATYDQHEDKVWALAIGRKTEMLATGGSDAIINLWNDSTAAEKEEA
FHKEEEEVLRGQDLENAISDADYAKAILLAFQLKKPHKLLELLLELYRKNIRIDHVRNAL
QSLGMEELGRLLEYVREWNTKPKLCHVANSVLLQAFSIHRPIDIDEVKGIGELLEGLIAY
SQRHYNRIESIERSLFTLDYTLNAMSVIEPEDVSRLTGSTLKRNLDKETASDVQEGGITE
TMETKPNKSSRKRKFRNSTETCTEMTKTLLDTKATSTV
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgtaactgcatcccttaagaaaagttacaaatgcactaaattcctggaacaa
ttctacagtggtggacccgtggctgtctcaactgatggctccttcatggcatgcgcctgc
aacaacaccattaaaattgtcaactgcgtcaccgcaaacgcctctatcaaagccaccctc
gaaggcgactctgaagccgttaccgctctcgctatctcccctgacaatgcattccttttc
tctgctagtcacagttgccaaattatggtttgggacctctcttcgctcacctgtgtgcgc
tcttggaagaatattggtgagggtccagtgctggctatggcttgtgatgcgtctggtgga
atgcttgcgactgtcggagctgacagaaaagtgcttgtatgggacgtagacgcaggatat
tgcacacattactttaaggggcatacagggattgttaattgcatcctatttcatcctgat
cctaacaacctcattcttttctcggcaagtgatgacaccactgtccgggcttgggatctt
gtagctggaaaatcaaaacaatgtgctgctacaatgaagaatcacgcttctgctgtggtt
acgttagcgatttcagaagatagaaggttcctgttcagtgctggaagagatcaggtggtc
agtgtgtgggatcttagcagctatacctgcaagatgacgatactaacaaatgaggttctt
gctgctgtttgtgcaattcattctggaactccattttatgacagtttatccttgaacaag
cttggacagagtaaaagtatacaagaagtttatttcttaactgctggtgaacgggggatt
gtccgtatatgggaagtttgtttgtctaagaagaaatattcagaggtagtttttaaaaca
gaccaggatgaccagagaagaggcttcactgcggcacatatgctgccctctgatcaggga
ttgttgtgcataactgctgaccagcagtttcttttttactcacccttgaagcattctgag
aaaattctacatttgagccttactaagcgacttattggatacaatgaagtaatagtagat
atgaagtttgtaggcgaagatgaaaatcttcttgctgttgccaccaatattgaacaggtg
catgtttatgacatggcatcaatgtcatgttcgtatgtacttgctggacattctaaaata
gttttgtgtctcgacaccttcattggaagttctggaagcacatatattgtgactggaagc
aaggacaaagatgtgagattatgggacacagaaacaagaaagtgtgtaggggttgggatc
ggtcacctgaaaggtgttggagctgttgctttttcaaagaaacagcggaactttttcgtc
agtggtagtcgtgataagacactcaaggtctggagctttgaaggccttatcagcgattct
gacaagccttaccgtcttaaaacaaaaggttctgtgggggctcataagaatgatattaac
tccgtggctatttcaccagatgacagttttgtttgtagtggttcagaggatcgtactgct
cgtctgtttaagcttccagaactcgtggaggtggcgtcactggtgggtcacaaacaggga
atttggtttgttgagttttctcctgttgacccttgtgttttgacagcatctaaagacaag
accataaaattatggtcagtgcgtgatcactcctgcttaaaaacatttgagggtcacaca
tctactgtgtatagagcatccttcatctcccaaggggctcagcttgtatcaactgatgcg
aatggcatactgaagctatggaacgtaaaatctattgaatgcattgcgacttatgatcag
cacgaggacaaggtatgggccttggcaattggaaggaaaacagaaatgctcgctactgga
ggcagtgatgcgattataaatctatggaatgattccactgctgctgaaaaggaagaagcc
ttccacaaagaggaagaagaggttctgcgaggtcaagatctcgaaaatgcaatatcggat
gctgattatgccaaagctatcctgctcgcctttcagcttaaaaaacctcacaagctcttg
gaactgctcttagaattgtacaggaagaacatcagaatagatcatgtgagaaatgctcta
cagtctctcgggatggaagaacttggtcgacttcttgaatatgttagagaatggaatacc
aagccaaagctgtgccatgtcgctaactccgtgctattacaggctttcagtatccatcga
cctatagacattgatgaggtgaaaggcataggggaactacttgaagggctcatcgcgtat
tctcagaggcactacaataggatagaaagcatagaaagaagcttgttcacgctagactac
actcttaacgcaatgtctgtcatcgaaccagaggacgttagtaggctaacaggtagcact
ttaaaaagaaatttggataaggagactgcatctgatgtccaagaagggggcatcacagaa
acaatggaaacaaagccaaacaagagctcaaggaaacgaaagtttcggaattcgacagaa
acttgtaccgagatgactaaaactttgctagacacaaaagctacttcaactgtatag
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