Silene latifolia (white campion): 141628705
Help
Entry
141628705 CDS
T11116
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00040
Pentose and glucuronate interconversions
slaf01100
Metabolic pathways
Module
slaf_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
141628705
Enzymes [BR:
slaf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
141628705
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
DUF6046
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
141628705
NCBI-ProteinID:
XP_074297910
LinkDB
All DBs
Position
2:21362160..21366743
Genome browser
AA seq
385 aa
AA seq
DB search
MKYRMKAMFFVYILLLATISFTPGECDTKVFNLKDYGAIQGGNVDISQALLKAWGDACNW
KGGSKLEVPSATYLVNPVILKGPCRGPIEFHNSGTLKGPQGLRGDSWIEFQYIDGLTLNG
GVFDGQGPPKQAAPGLPTLLRFTFITNSRAQLVKLINSQSTHFHLFGCKQIVIDQISISS
PENSPNTDGIKIGESNGIDILKTNIESGDDCVALIRGSKDITVSGVTCGPGHGISIGSLG
ESENEQVEHVVVRQCRLFDTTNGLRIKTKASDMSGTVSNITYQDISFRNVDNPIVFDQNY
CPSRTCRQGNSRVQIKDIKFINVHGTSKINTAVVLQCSGSNPCKGIELKDINIAYYKYQA
STISNCSNVHGQSSGIQIPKPCISV
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatagaatgaaagccatgttttttgtttatatattgctcttagccactatttcc
ttcacacctggagaatgtgatacaaaggttttcaatttgaaagattatggtgctattcaa
ggtggaaatgtcgatatcagtcaggctttgttgaaagcatggggtgatgcatgcaattgg
aagggcggaagcaaattggaagtcccttcagctacttacttggttaacccggtaatattg
aaaggcccatgcaggggcccaattgagttccataattcaggcactttaaagggcccacag
ggcctaagaggcgattcttggattgaatttcagtatattgatggattgactttaaatgga
ggagtttttgatggtcaaggcccaccaaaacaggctgctcccggccttccaacgctacta
agattcacatttatcacaaattcgagagcacaattagtgaaactaatcaacagtcaaagc
actcatttccacctctttggttgcaaacaaattgtcatagaccaaataagcatatcatca
ccagaaaacagtccaaacactgacggaattaagatcggcgaatcaaatggcattgatatc
ttaaagacaaacatagagtcgggagatgattgtgtagcccttattcgcggtagtaaggat
attactgtcagtggggtcacttgcggtccgggtcatggtattagcattggaagcttgggt
gagtccgaaaatgaacaagtcgaacacgttgtggtaagacagtgtagactttttgatact
acaaatgggttgaggattaaaaccaaggctagtgacatgtctggcacagtaagtaatatt
acgtaccaagatatctcatttcggaacgtcgataatcccatcgttttcgaccaaaattat
tgcccgtccaggacttgtcgacagggtaattctcgagtgcaaataaaggacatcaagttt
ataaacgtacacgggacatcaaagataaacactgcggtagttttacaatgcagcggaagc
aatccatgcaaggggatcgagttgaaggacattaatattgcttactacaaataccaagct
agtacgatatcaaattgctctaatgttcatggccaatcttccggtatacaaatacctaaa
ccttgtatctcagtatag
DBGET
integrated database retrieval system