Silene latifolia (white campion): 141633492
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Entry
141633492 CDS
T11116
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03440
Homologous recombination
slaf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141633492
03460 Fanconi anemia pathway
141633492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
slaf04121
]
141633492
03036 Chromosome and associated proteins [BR:
slaf03036
]
141633492
03400 DNA repair and recombination proteins [BR:
slaf03400
]
141633492
Ubiquitin system [BR:
slaf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
141633492
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
141633492
DNA repair and recombination proteins [BR:
slaf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
141633492
FA (Fanconi anemia) pathway
Downstream FA components
141633492
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
BRC-2_N
Motif
Other DBs
NCBI-GeneID:
141633492
NCBI-ProteinID:
XP_074302049
LinkDB
All DBs
Position
Y:complement(468001817..468011300)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSTWQLFSDDDNNFRWKISPETTHSSQHVHLPSSPPAPLPSCHDVLLLGCSKIFEDNDES
SKSDDNNHFGNGDAGGRLPMFSTGLGNSVVLDKASIAKAASILGDDFKDNVNAGHEFISP
NSVFQMGSGKKAGGQGFVSPNSMFQTGSGKKVNISSAGLSRAKALLGMNENDGDEPPKKI
LRGGDGLRYEMPPNLGKAHMVINHGGTENGTLLKKARLHSKNEIVDQNISNLIQPGMCNP
SVKSSGFKFQTAGGRSISVSGDALQRAKNLLGDQEIGSLLDEEDAGASMFSFCKNGNSDG
GLFNKENNIGHFTLHQLEKSEQNPKIFVSPMKQSSDRKQTKAKSEALVSGTNLISKFNAE
ASLCISSGKQPCPKEPFMENHFGSEVTSQHTMANGVGSGLHRSLKQSGRPLADITNTIDT
NSTSVKGTPSEVRRLGRRTSLTPFKMPRSSKFVTPLNNNLHVIPNGYSSRMSETSFPRRK
VSMRYPPQSSRTYITEFFKEPPAYPQKLEIISSELRQINPECSEEYTFLDGSRTIDAGTF
YDMLLQSGASAQHITKKWVANHYKWIVWKLACYERLYSAKFAKKFLTSSNVLEELKYRYE
REVNHGQRSAIKRILEGDASPTSMLVLCISAIRSASEGTSSTKLTGETSMARLELTDGWY
SIDALLDPLLSKHLAVGKLFVGQKLRICGAGLNAWEGPVSPLEASATVSLVLHINGTYRA
SWDARLGLCRGAYAPLAFRCIKGNGGSVPRTLVGVTRIYPVLYRERLKNGGYIVRSEKME
TAVSQLYSQRRSNIIEGLTLDFQRGSNNSFVADDYDNEEGAKILKMLEHAAEPELMMAEM
SSEQLTSFSIYRAKAEENRQCDLQKLIEKAIEDAGLSGREVSPFMRVRVVGLQCKDHAKI
KDFREGLITIWNPSERQKLELEEGQTYAISGLLPLHSDSNTLYLQARGSSTKWQPLKTIE
NKSFMPFFNPRKALSLSRMGEVPLSSEFDTAVFVVHVGLEHVDGLQKKQWVFVTDGSLSE
LRTDDSTMPLLAISFCSPCTDDDSTSPINYNLVGSIVCFCNLVKRAKDHANHMWVAEATE
NSTYYLNYEHPSCSHVKDAFGLVKKWEQNSSLTIEKLKKRVLYIIGDNAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcagttattctccgacgacgacaataattttcggtggaaaatatcgccg
gagacgacacattcgtcgcaacatgtccaccttccgtcttctcctcctgctccattgcct
tcatgtcacgatgtcctccttttaggatgttcgaagatttttgaggataatgatgaaagt
agtaagagcgatgacaataatcactttggtaatggtgatgctggtggtcgtcttcccatg
tttagtactggattggggaattcagttgtgcttgataaagcttccattgccaaagctgct
tcgattcttggtgacgattttaaggataatgtcaatgcaggacatgagttcatttctcct
aattcagttttccaaatgggatctgggaaaaaagccggaggtcaaggcttcgtatctcct
aattccatgtttcaaacaggctctggaaaaaaggttaacatttcttctgcggggctttct
agagccaaggcgttgttgggtatgaatgaaaatgatggtgatgaacctccaaaaaagata
ctacgtggtggtgatggattgagatatgaaatgccaccgaatttagggaaggcacatatg
gttatcaatcacggcggaactgagaatggtacactattaaaaaaggctcgtcttcactca
aagaatgagattgttgatcagaatattagtaatcttatacaacctggaatgtgcaaccct
tctgtaaaatcttctggattcaagttccaaactgctggcggtaggtctatttctgtgtct
ggtgatgcattgcagcgcgcaaaaaacctccttggtgatcaagagattggtagtttatta
gatgaagaagatgcaggtgcttccatgttttcattttgcaagaatggtaattcggatggg
ggcctctttaacaaagagaacaatattggtcatttcactcttcatcaacttgaaaaaagc
gagcaaaatcctaagatctttgtatcgccaatgaaacagtcttctgacaggaagcaaacc
aaagccaaatcagaggcattggtttcagggaccaatttaatatcaaaatttaatgctgag
gcaagcctctgcatttctagtggtaaacaaccatgtccaaaagaaccttttatggaaaat
cattttggcagtgaagtaacaagccagcataccatggcaaatggtgtgggctccggtctt
cataggtctctaaagcaatcaggaagaccacttgctgatatcacaaacaccattgacact
aattctacaagcgtcaaaggaacaccatctgaggttaggagacttggaagaagaacttcc
cttactcctttcaagatgccacgaagctcaaagtttgttactcctctaaacaataacctc
cacgttatcccaaatgggtactcgagcagaatgtctgaaacttcatttcctcgaaggaag
gtttctatgcgttacccacctcagtcttcaagaacttacatcaccgagttttttaaagaa
cctccagcatacccacaaaaactagaaattatttcttcggagctacgacagattaatcca
gaatgttcagaggaatacacatttttggatggatcccgcacaattgatgctggcactttc
tatgatatgctgctccaatctggagcatcagctcaacatatcacaaaaaagtgggtagca
aatcactacaagtggattgtgtggaaactagcatgttatgaaagattatattcagctaag
tttgcgaagaaatttctcactagttctaatgtgcttgaggaattaaagtacagatatgaa
cgagaagttaatcatggtcaacgttctgcaattaagagaattttagaaggagatgcgtca
cctacttccatgctagtgttatgcatttcagctatccgatcagctagtgagggaacttca
agtacaaaattgactggagagacaagcatggcaagattggaacttacagatggatggtat
tctatagatgccctgttggatccactgctgtccaaacacctagctgttggaaagctattt
gttgggcaaaaactgcggatatgtggggctggattaaatgcctgggaaggacctgtttct
cctcttgaggcgtctgcaaccgttagtttggtgcttcatataaatggaacttacagagct
agctgggatgcacgtttaggattgtgtagaggtgcctatgcaccactggcatttagatgc
atcaagggcaatggaggctcagtacctaggaccttagttggagttaccaggatatatcct
gtcctttacagagaaaggttgaagaatggaggatatattgtgaggtcagagaaaatggaa
accgcagtctcacagctttatagccagaggcgttctaacatcatagaaggtcttacatta
gactttcagagaggttccaataatagttttgtggccgatgattatgacaacgaagaaggg
gcaaagatcttgaagatgcttgagcatgctgctgagccagaacttatgatggcagaaatg
agttctgagcagctaacatcgttttccatttaccgtgcaaaagctgaggaaaacaggcag
tgcgacttgcaaaagttgatcgaaaaagccattgaagatgcaggactaagtggcagagaa
gtctccccatttatgcgtgtaagggtcgttggactacaatgtaaagaccatgctaaaatt
aaagacttcagggaaggattaataacaatctggaacccttctgaaaggcagaaacttgag
cttgaagaggggcaaacttatgctatttcgggcctcttaccgttgcattctgattcaaac
acactttatctacaagccagaggatctagtactaaatggcagcctttaaaaacgatagag
aacaaatcttttatgcccttcttcaatcctcgcaaggctctttcattatcaagaatggga
gaagttccactgtcaagtgaatttgatacagctgtgtttgtcgtgcacgtgggcctggaa
catgttgatggtctccaaaagaaacagtgggtgtttgttactgatggatccttgagtgag
ttaagaactgatgattcaacaatgccattgctggccattagcttttgctctccgtgcact
gatgacgattcaacatctccaatcaactataatcttgttggatctatcgtctgcttttgt
aatcttgtgaagagagctaaagatcacgcgaatcatatgtgggttgcggaagctactgaa
aattcgacatattaccttaattatgagcatccttcttgttcccatgttaaagatgccttt
ggcttagtcaagaaatgggagcagaattccagtttgacaattgagaagctaaagaagagg
gtcctatatataattggtgataatgctccctga
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