KEGG   Silene latifolia (white campion): 141633743
Entry
141633743         CDS       T11116                                 
Name
(RefSeq) pre-mRNA splicing factor SR-like 1 isoform X1
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
slaf  Silene latifolia (white campion)
Pathway
slaf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:slaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    141633743
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:slaf03041]
    141633743
Spliceosome [BR:slaf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    141633743
SSDB
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 141633743
NCBI-ProteinID: XP_074302263
LinkDB
Position
Y:complement(98438515..98469132)
AA seq 421 aa
MGDLQTSGKPIDSLVEKVLCMNILSSDYFRDLFRLKTYHEVVDEIYNQVDHVEPWMTGNC
RGPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYAGDAKTLWKWFEPYV
NDDEEFSPGSNGKMTTMGVYVRDLLLGQYYFDTLFPRVPVPVLRQITSNLEKMNLPTKPS
GSIGDNSRFGSEDTARRPPSVKAALSVSFGQRAPHRASTRDSSPVRRALPPSSYDDGGRD
DSRRSPSRHRSQSRDLSDRDYMDRDRYRDRDRGRDWNGYSDRDIRDCDGDRARDRYRDYD
RDRDRDRRRDYDRPRYSEREGSRRDRGNGRHSDYRSRRSRSRMSRSRSRSRQTPSERFDV
HSSSQRDAGKEKEKASVSSNLAKLKDLYGDLSEQKGDASTGRGFKDSGSEEVIRLGGSTW
R
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgggggatttacaaacatcaggaaaacccatagattcgttggtggagaaagtattatgt
atgaatatactttcttcagattattttagggatctttttcgattgaagacgtatcatgaa
gtagtcgatgaaatttataatcaagttgatcacgtggagccatggatgacggggaattgc
cgcggtccgtcgaccgcgttttgtttattgtataagttttttacgatgaagcttactgtt
aagcaaatgcacggcttgcttaagcatcctgattctccttacattcgcgccattggtttc
ctctacctgagatatgctggagatgcaaaaactctgtggaagtggtttgaaccatatgtt
aacgatgatgaggaattttctcctggatctaatggaaagatgacgactatgggtgtgtat
gtgcgagatcttcttcttggacagtactattttgatactctctttcctcgtgtccctgta
cctgttctccgtcagattacgtcaaatcttgaaaaaatgaacctgcccacaaagccttca
ggctctataggagacaacagtagatttggatctgaagacactgcacgccgtcctccttct
gtcaaggctgctctttctgtttctttcggacaacgtgctccccatagggcatcaactagg
gattcttctcctgttcgccgtgccctgcccccttcttcgtatgatgatggtggtagagat
gattcacgaagatcccctagtaggcatcgtagtcagagccgtgatttgtctgacagggat
tacatggatagggatcgataccgtgaccgggatcggggccgagattggaatggatatagt
gaccgagatattcgtgactgtgatggagatcgggctcgggatcgttaccgggattatgat
agagatagagatagagatcggaggagggattatgacagacctcggtactcagagagggag
gggagtagaagggatcggggcaatggcagacatagcgattaccgctctcgaagaagcagg
agcagaatgagtaggagtagaagtcgtagccgccaaactcctagtgaacgctttgatgtt
cattccagctctcagagagatgcaggcaaagaaaaagaaaaggctagtgtgtctagcaat
ctggctaagctcaaagatttgtatggtgatctaagtgaacaaaaaggtgatgccagtaca
ggaagagggttcaaggacagcggctccgaagaagttatcagattaggtggttcgacttgg
aggtaa

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