Silene latifolia (white campion): 141638248
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Entry
141638248 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141638248
KO
K24738
rabconnectin-3b
Organism
slaf Silene latifolia (white campion)
Pathway
slaf04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
141638248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
slaf04131
]
141638248
Membrane trafficking [BR:
slaf04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
141638248
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_Nup120_160
Beta-prop_IFT122_1st
PAC11
EIF3I
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_2nd
CFAP251_N
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
141638248
NCBI-ProteinID:
XP_074303756
LinkDB
All DBs
Position
Unknown
AA seq
1467 aa
AA seq
DB search
MKCRSVVGIWPETPPSHRITAVAVAHNPPSIYTGAADGSIFWWHFSANDSSSSPKIIPVA
ILCSHAAPVVDLCLCYPLLTPSDENVDHEKDLGVDSSNNDQAALVSACSDGVLCLWSRGS
GHCRRRRKLPPWAGSPSMVQMLPSNRRYLCVASCFSNGLHASDHEYVDYTEGNEVIGDQE
SFCKKATKCTIVIVDSYTLTIVQTVFHGHLSIGPLKYMTIIDPVDDKEKSSALIVDSYGN
IQLILLVEESNLDKEGGTKLHSESSRMNIATVDKGSCEGGLVVYVTSCGLILGLVYETQC
VIMLLPSSTVIGVIPFENIDGTLSHIVGGMFISSDISCGSQPGKIQSSFEIDFVVWDEKG
FAIVYKISFVHNTFKYEVICEIPACVFPFDVKICTNFVQLGCFFLRVESLCLNCDEPLLW
RPRFTIWSLHQHLDGRENIANTCKLLGESDFLINGIYESNLVLESEASELIFCEKATARE
GALTSNNCAPGQEENITLYKDDLKSISVKKEHIVSSSMIISQNVNYPYALVYGYHNGDIE
LVQFNMLTQKPDDGVTLNSDMTSVGSKQLLSGHTGAVLCLAAHQMVVTTNDQSYRKVLLS
GSMDCTLRVWDLDTGSPVMVMHHHVAAVRQIVLPPFQSDHPWDDCFLSVGEDSCVALVSL
STLRAERIFPGHPTYPGQVIWDSVRGYLACLSQNNSVASSVKDVLYIWDIKAGSRERVLR
GTAAHSMFSNFCRGMNISNISGCAYNTSNTSFDHPLTEDGSSLPSKLKSSQANSFNEVHG
LDHGNHSVSRGDKCVKLTPGNHDKVPIRCYCPNSGITILSFDLSSLLSVDGSGDQSLGPA
NDSQKVSSPSSKTVANYSSEQGTLHETIKNDQCVNSFKLCLLRFSLSLLHLWGVDCELDN
LLMMEMNVKRYENLMFAPGLEGDRGSITLAFPAFRSTLQLWKSSSEFCALRSLIMVSLAQ
CMVSLCNSCSGSSSALSAFYTRHFAEKVSAMKPPSLQLLVSFWQDEDEHVRMAARSLFHC
AASRAIPPPLFCPRTTDQTNIVNAVNQVNGNNLELANKTGIQVNCSGDGESAIINWMNSY
ELHDWISCVGGTSQDAMASHIIVAAALAIWYPSLVKPTLAMSVVHPLIKLVMAMNEKYSS
AAAELLAEGMDSTWKACLGAEIHRLIEDVFFQIECVSGGSKLRETLVTVLLPSLAMGDIP
GFLGVIEGLIWSTASDSSVHLVSLKTIIRLMRGSPRNLAQFLNKVVNFILQTIDPANSVM
RRTCLQSSMATLREVVRVYPMIALNDTSTQLAVGDAISEVNSASIHVYDMQSVTKIKVLD
ASGPPGLPTLLSGPSETVVTAISALSFSPDEEGLVAFSEHGLIIRWWSLGTAWWEKLSRN
LAPVRCTKLIFVPPWEGFSPNSSRGSIMANIAGSSRQATSQCHLHSSNLDSLNLLLYSLD
LSYRLEWVGNRKVRLLRHGHEIETFLM
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtcgatcagtggtcggaatttggccagaaactccgccgtctcatcgcatcaca
gccgtagcagtcgcgcacaatcctccttctatctacaccggcgccgccgatggctccatc
ttctggtggcacttttccgccaacgactcttcttcttcaccgaaaattatacctgttgct
atactatgtagccatgctgccccagtagtggatctttgtctttgctatcctcttttgaca
ccatcagatgaaaatgtggatcatgaaaaagatttaggagttgatagttccaataatgat
caggctgcattagtaagtgcatgcagtgatggtgtattgtgtctctggagtagaggaagt
gggcattgtaggcgccgaaggaaattgcctccatgggcaggtagtccatccatggttcag
atgttaccttcaaatagaagatacctatgtgttgcttcttgtttcagtaacgggttacat
gcgtctgaccatgaatatgtggattatacggaagggaatgaggttattggggatcaggaa
tctttttgcaaaaaagccaccaagtgcactattgtcattgtcgattcctataccctcacc
attgtccaaacagtttttcacgggcatttgtctattggcccattaaaatatatgaccata
attgatcctgttgatgacaaagaaaagagttcggctcttattgttgattcatatggtaat
attcagttgattctgcttgttgaagaatcaaatttggacaaggagggtgggactaagcta
cattctgaatcttctcgtatgaacatagcaactgtagataagggatcttgtgaaggagga
ttggttgtatatgtcacttcgtgcgggttgattttggggcttgtatatgaaacccaatgc
gtcatcatgctacttccaagcagcactgttattggcgtgattccttttgaaaatattgat
ggtacgttgtcacatattgttgggggaatgttcatctcttctgacatttcttgtggttct
caacctgggaaaatacagagtagctttgagatagattttgttgtatgggatgaaaaagga
tttgctatcgtatataagatatcatttgtgcacaacacttttaagtatgaggttatctgt
gagatacctgcctgcgtattcccctttgacgtaaaaatatgtacaaattttgttcagttg
ggttgtttttttcttcgggttgagtcactttgcttgaactgtgatgagcccttactgtgg
agacctcgcttcactatttggtcattgcatcagcaccttgatggccgtgagaacattgcc
aacacttgtaagctacttggagaaagtgactttctgatcaatgggatttatgaatcaaat
cttgtcttagaatctgaggcctctgagctcattttttgtgaaaaagctactgccagagag
ggtgctctaacatcaaataattgtgccccaggccaggaagaaaatattactctatataaa
gatgatttgaagagtatttctgttaagaaagagcatattgtttcttcatcgatgatcata
tcgcagaatgttaattatccttatgcacttgtgtatggatatcataatggtgacatagag
ttggtccagttcaacatgttgacccagaaaccagatgatggtgtgactctaaattctgac
atgacctctgtaggctcaaagcaactgctttccggacacacaggtgcagttttatgtttg
gctgcgcaccaaatggtagttaccactaatgatcagtcttacagaaaagttttgttgtct
gggagcatggattgcactcttcgtgtttgggatcttgatactggcagtcctgttatggtc
atgcaccatcatgtggccgctgttcgccaaattgtcttaccaccctttcaaagtgatcac
ccttgggatgattgctttctctcagttggggaggactcttgtgttgctcttgtgtctcta
agtactttgcgggctgaaagaatatttcctggacatcctacttatcctggtcaagtcata
tgggatagtgtgagaggttatttggcgtgcctctctcagaataattcagtagcatcgagt
gtaaaagacgtgttatacatttgggacatcaaggctggctctagggagcgagttctgcgt
ggcacagctgctcactcaatgttcagcaacttctgcaggggtatgaacatcagcaacatc
tctggatgtgcttataatacgtcaaatacttcgtttgaccaccctttgaccgaagatgga
agctctttaccatccaagctgaaaagcagccaggcaaattcatttaatgaagtacatgga
ttagatcatggcaaccattctgtcagtaggggagacaaatgtgtaaaactaactccagga
aaccacgacaaggttcctattagatgctattgtccgaattctggaattacaattttgagt
tttgacctgtcatctctattatctgttgacggcagtggcgaccagtcgcttggtcctgca
aatgattcacaaaaggtttcgagtcccagctcaaaaactgtggccaattattcatctgag
caaggtaccttacacgaaacaatcaagaatgatcagtgtgttaactcatttaagttatgc
ttgttgcgatttagtttatcacttttgcatttgtggggcgtggattgtgaacttgacaac
ctgctgatgatggagatgaatgtaaagagatacgaaaatctgatgtttgctcctggtcta
gagggggatagaggttctattacattggccttccctgcttttagatcaactcttcagctt
tggaaatcatcgtcagagttctgtgccttgagatctttaataatggtgtccttagcccag
tgtatggttagtttgtgcaactcttgctctggatccagcagtgccttatcagcattctac
acacgtcactttgcagagaaagtttcagctatgaagcctccatcgttgcagctattggtg
agcttctggcaagatgaggatgagcatgttcggatggctgctcggtctttatttcactgt
gctgcatcaagagctatccctccaccattattttgtccgaggacaactgaccaaacaaat
atagtaaacgctgtgaatcaagtaaatggaaataatctggagcttgcaaataagacagga
atacaggttaactgttcaggagatggggaatctgccataatcaattggatgaattcatat
gagctacatgactggatctcctgtgttggtggaacaagccaagatgcaatggcatcacat
ataattgtggcagctgccctggccatttggtatccgagcctcgtaaaaccaacccttgcc
atgtcagttgtccatcctttgatcaagttagttatggctatgaatgagaaatatagttct
gcagctgctgaactcctggcagaaggcatggatagtacatggaaagcctgcttaggtgct
gaaattcatcgtctcattgaggacgttttcttccaaatagaatgcgtaagtggtggatct
aaacttcgagaaactctggttactgttctacttccaagcttggcgatgggtgatataccg
gggtttctgggtgttattgaagggcttatttggtcaactgcatccgattcatcagttcat
cttgtttcgctgaagacaataataaggctcatgcgtggctctcccagaaacttagctcag
tttttaaacaaggtggtcaacttcatcttacaaacaattgatccagctaattcagtgatg
cgcaggacctgccttcagagttcaatggctactttgagagaagttgtgcgtgtttatcca
atgattgcgttaaatgatacttcaacacaactggctgttggggatgcaatttcggaggtt
aacagtgcaagcatccatgtgtatgatatgcaaagtgtcacaaaaatcaaggtccttgat
gcaagtgggcctcctggactgccaactttgctttctggaccttcagaaacagtcgttact
gcgatttctgcgttgagcttctcaccagatgaagaggggctggttgctttttctgagcat
ggtttaataataagatggtggtctttgggaaccgcatggtgggaaaagctgagtcgtaat
ttagctcctgtccgatgcaccaagcttatttttgttccaccgtgggaaggcttctcacct
aattcttccaggggaagtataatggctaacattgctggaagtagtagacaggcaacctca
cagtgtcacttacactccagcaacttggacagcttgaatcttttgctgtatagtctcgac
ctctcctaccggttagagtgggttggaaatcgcaaggtacggctcctgaggcatggtcac
gagatagagacctttctcatgtaa
DBGET
integrated database retrieval system
