Silene latifolia (white campion): 141642045
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Entry
141642045 CDS
T11116
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141642045
03036 Chromosome and associated proteins [BR:
slaf03036
]
141642045
Transcription machinery [BR:
slaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
141642045
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
141642045
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
HTH_44
Spt6_S1
HHH_9
HHH_3
Tex_central_region
SH2
S1
Motif
Other DBs
NCBI-GeneID:
141642045
NCBI-ProteinID:
XP_074306810
LinkDB
All DBs
Position
2:3920042..3930044
Genome browser
AA seq
1633 aa
AA seq
DB search
MGGRAVVSDDEEEFEVQDDEREQEEDAEDLEDGDVGGGGGGGDEDDDDEDEEGPDEYEKD
DFIVEEDEDEDQPGEEDREDDDDDERRKKKKRKKKDFQLDEDDLQLLEDANIPVSRKAAS
DKKFKRLKKARGDAEGGHSGFSDEEEFAGSKKGGGRGEEQVHRSLFDDDDGDAIEDIREE
YDEQQEEEDVDMVDEDDMADFIVEEEDVDETGAPVRRRKVKKKKFNPSTGVSSSAIQEAQ
EIFGDVEELLNQRRLNLDRSMIYDETSGRRLEDEFEPSVLIRNKMRPEDELIREIDIPER
IQVSEKSTGPPSTDVGAIKAEATWIRKQLESAVVPVLVKMSALGEQEVEELEDHIRNFLN
FVHVQKLDLPFISMYRKEDIFSLLKDPEKGENFSRDGLKWHKVLWAVRDLDTKWLLLQKR
KTALLAYYNKRFEEESRRIYDETRLSLNQQLFVSILHMLEEAESEREVDDVDAKFNLHFP
SGEAGVDEGQQKKPKRKSIYAICNKAGLWEVASKFGCSSEQFGMQISLESTRVDEPEDRK
ETPEEVASNFTCAMFDSPQSVLKGARHMAAVEISCEPRVKKHFRSIYFDNVTVSTCPTTD
GNTVIDAFHQFAGVKWLRNKPLNKFEDAQWLLIQKAEEEKLLQVTIKLPEEILNKLVNDS
QEKYLSCGVSRSAQLWNEQRKLILEDAIFNFILPALEKEARLLLTSRSKNRLLMEYGKRL
WDKVSVAPYRRKEREMSSDDEVAPRVMACCWGPGKPANTFVMLDSFGEIVDVLEAGSISL
KSHNAADQQRKKHDQQNLLRFMTEHQPEVVVLGAVNLSCTRLKDDIYEIVFKMVEENPRD
VGQDMDGLSVLYGDESLPRLYENSQISSEQIPGQRGIVKRAVALGRYLQNPLAMVASLCG
TEQEVLSWKLNPLESFLNNDEKYGMVEQIMVDVTNQVGIDLNLAANHEWLFTPLQFISGL
GPCKAASLQRSLVRSGAIVTRKDLLTNHGLGRKVFISAAGFLRVRRSGLVVSSNQFVDVL
DDTRIHPESYALAQEMAKDIYRVIIGDDNLDDDDAIEMAIEHLRDKPVALKSFNVDLYAR
DTDRESKIETLHAIKLELMQGFQEWRKKYEELSQEEEFYLISGETDDTLCEGRIVQATVR
RVQPQRAICGMESGLTGMLTREEYSDDWRDDLTEKLHEGDVLTCKIKSILKNRYQVFLTC
REKDMRNNIHDNVVLDPYYHEDRSSLQSEQEKARKDKELAVKRFKPRMIVHPRFQNITAD
EAMKLLADKDPGESIIRPSSRGPSYLTLTLKIYEGVFAHKDIIEGGKDHKDITSLLRIGK
TLKIGDDIFEDLDEVMDRYIDPLVGHLKAMLSYRKFRTGTKAEVDEDLKTYKFKHPNMIA
YCFGISHEHPGTFILTYIRSSNPHHEYIGLYPKGFKFRKRMFEDINRLVAYFQRHINDPP
VHESLSIQSVAAMVPMRSPATSGFSGGRGGSGGRDGGYRGSSDRDHSSHGGRSGRNDNRS
SGRDGHPSGAPRPYDAGRERGARGRDHSDRRDSGYGGSRWSSDNKEVNKNWETFPGAKVQ
NAPGEEAFPGGWGGSSGVGGSSSGDGAWGGSSDVGGGAGVGGWGDTNDVSGGGGGSGGWE
GDEPSTKGSSKGW
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaagagctgtagtttccgatgacgaagaggaattcgaggttcaggatgatgag
agagagcaagaggaggacgcggaggatctcgaagacggcgatgttggaggcggtggcggt
ggtggtgatgaggacgacgacgacgaagacgaagaagggccagatgagtatgaaaaagac
gactttattgttgaggaggacgaagatgaggatcagcctggtgaagaagatagggaagat
gacgatgatgatgagaggcgtaaaaagaagaaaagaaaaaagaaggattttcaacttgat
gaggatgacttgcaactactggaggatgccaatattcctgtttctcgtaaagctgctagt
gacaaaaagtttaaaagactgaagaaagctcgtggggatgctgagggtgggcattctggg
ttttctgatgaagaggagtttgctggttctaaaaaaggtggagggagaggggaggagcag
gttcaccgttccttatttgatgatgatgatggagatgccattgaggatatccgtgaagag
tatgatgagcagcaagaggaggaggacgtagacatggttgatgaagatgatatggctgat
tttattgttgaagaagaagatgttgatgagacgggggcccccgtgaggcggcgtaaggtg
aagaagaagaaatttaacccatctactggggtttcatcatccgctattcaggaagcccag
gagatttttggagatgtcgaggaacttctcaatcagcgacggctgaacctggatagatct
atgatttatgatgagactagcggaaggagacttgaagatgagttcgaacccagcgttctc
ataagaaataaaatgagaccggaggatgaactaatcagggagattgatataccagagaga
attcaggtgagtgagaagagtacaggtcctccttccactgatgttggtgcaatcaaagca
gaggccacatggattaggaagcagctggaatctgctgtagttcctgttttagtgaagatg
tcagcacttggagagcaggaggttgaagagttggaggatcatattagaaattttttgaac
ttcgtacatgttcagaaacttgatctccctttcatttccatgtatcgcaaggaggacatt
ttcagtttgttgaaagatccagaaaaaggtgaaaactttagtcgtgatggactgaagtgg
cacaaggtgctttgggctgttcgagatttggatacaaagtggctgcttcttcaaaagcga
aagactgctctgttggcgtactacaataaaaggttcgaggaagaatctcgtagaatatat
gatgagactagacttagtttgaaccagcagctctttgtctcgattcttcatatgttggag
gaagcagaatctgaaagggaagttgacgatgttgacgcgaaattcaatttgcattttcct
tctggagaggcaggagtggatgagggacagcagaaaaaacctaagcgaaaatccatttat
gctatatgcaataaagctggtttgtgggaggttgccagcaagttcggctgcagttctgag
cagtttgggatgcagatctcgttggaatcaacgagagtggatgaacctgaggaccggaag
gagacacctgaagaggtggcttcaaattttacctgtgccatgtttgactctcctcaaagt
gtcttaaaaggtgcaagacacatggcagcagtggagataagctgtgagcctcgtgtgaaa
aaacattttcgtagtatatactttgacaatgtgacggtgtcaacatgtcctacaactgat
gggaatactgtcatagatgctttccatcaatttgctggtgtgaagtggttacgaaacaaa
cctttaaacaaatttgaggatgcccaatggcttcttatccaaaaggcagaagaggaaaag
cttctgcaagtcactatcaaattgccagaggaaatacttaataaactagtaaacgattct
caggagaagtaccttagttgtggtgtaagcaggtctgctcagctgtggaatgagcagagg
aaactgatactagaggacgcaatttttaattttattctgccagcgcttgaaaaggaagca
aggttgcttttgactagcaggtccaagaaccgcttgctaatggaatatggcaaacggttg
tgggataaagtatctgtggctccatatcgtcgtaaagagagagagatgagctcagatgat
gaggtagctcctagggtcatggcttgttgttggggtcctggaaagccagcaaacactttt
gtgatgttggattcatttggagagattgttgatgtgctagaggctggttcaataagcttg
aagtctcataatgcagctgaccagcagcgtaaaaaacatgaccagcaaaatctgttacgg
tttatgacagaacaccaacctgaggttgttgtcttgggtgctgtgaatttgtcttgcact
aggctgaaggatgatatttatgagattgtttttaagatggttgaagaaaatcctagggat
gtcggccaggacatggatggattgagtgttctctacggagatgaatctttgcctcgtctc
tatgaaaattctcaaatatcctctgagcagatccctggtcagcgaggcattgtaaaacga
gctgttgctttaggacggtatcttcaaaatccattagctatggttgcttcactctgtggt
actgaacaggaagtattgtcatggaaactcaatcctctagagagctttcttaataatgat
gagaaatacgggatggtggaacagataatggttgatgttactaatcaggtgggcattgat
ctcaatttggctgcaaatcatgaatggttatttaccccattgcagtttatctctggtctt
ggaccgtgtaaagcagcctccttacagaggtcattggttaggtccggggcaattgtcact
cgaaaagacttactgactaatcatggacttggaagaaaggtattcatcagtgcggctggt
ttcctgcgtgttagacgcagtggtctagttgttagtagcaaccaatttgttgatgtcttg
gatgatacaagaatacatccggagtcctatgctctcgcacaggaaatggcaaaagatata
tacagggtaataattggtgatgataatttggatgatgatgatgcaatcgagatggcaatt
gagcatcttagagataaaccagttgcccttaagtcttttaatgttgatttgtatgctagg
gatacagatcgagagtctaagatagagaccttgcatgctattaaactggagttgatgcaa
gggttccaagagtggcgtaagaaatatgaagagctttcccaggaagaggagttttatctg
atatctggtgagactgatgatactctttgtgaaggacgaattgtccaagctactgttcgc
agggtgcaaccgcagcgagccatatgtggcatggaatcagggttaaccggtatgcttaca
agggaggaatattcagatgattggagggatgatttaactgagaagttgcatgagggtgac
gttcttacttgtaagatcaaatcaatcctgaaaaataggtatcaggtgttcttaacctgc
agagagaaggatatgagaaataatatacatgataatgtagtccttgatccttactatcat
gaagatcgaagcagcttacaaagtgaacaagaaaaggcacgtaaagataaagagcttgca
gtaaaacgttttaagccaaggatgatcgtccatcctcgctttcagaatatcacagctgat
gaagcaatgaagttattagcagacaaggatcctggtgaaagcataattcgtccaagttct
cgtggtccatcttatttgacgctgactctcaagatttacgaaggcgtgtttgctcacaag
gatataattgagggcggaaaagatcacaaagatatcacaagcttgcttcgcatagggaaa
actttgaaaataggggacgacatttttgaggatttggacgaggttatggaccgttacatt
gatcccttagtcgggcatctaaaagcaatgctgagttataggaagtttcggacggggaca
aaagcagaagtcgacgaggaccttaagacttacaagtttaagcacccaaatatgatagct
tactgctttggcatttctcatgagcatcctggcacctttattcttacttacatacgaagc
tctaatcctcaccatgagtatattggtctataccctaaaggatttaaattccgcaagagg
atgtttgaggacattaacaggcttgtggcatatttccagaggcatattaatgacccacca
gtccatgagtcattatctatccaatcagttgctgctatggtgccaatgcgtagtcctgca
accagtggtttctctggtggacggggtggctctggtggtagggatggtggatatcgagga
tcttcagacagagatcattcttctcatgggggtagatcaggtcgaaatgataacagaagc
agtgggcgagatgggcatcctagtggtgcgccaaggccatatgatgcagggcgtgaacgt
ggagcacgtgggcgtgaccactcagatcggcgagattctggctatggtggatcgagatgg
agttcagacaacaaagaagtgaacaagaattgggaaaccttcccaggtgccaaagtacag
aacgcccccggtgaggaggcatttccgggtggttggggaggcagtagcggtgtcggtgga
agtagtagtggagatggagcttggggaggtagtagcgatgtcggtggaggagcgggagtt
ggtggttggggagacaccaacgatgtgagtggaggtggaggtggcagtgggggttgggag
ggagatgaacctagtactaaaggcagctctaagggatggtag
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integrated database retrieval system
