Silene latifolia (white campion): 141642211
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Entry
141642211 CDS
T11116
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141642211
03041 Spliceosome [BR:
slaf03041
]
141642211
03036 Chromosome and associated proteins [BR:
slaf03036
]
141642211
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141642211
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141642211
mRNA cycle factors
Common to processing body (P body) and stress granule
141642211
Spliceosome [BR:
slaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141642211
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
141642211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141642211
NCBI-ProteinID:
XP_074307029
LinkDB
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Position
2:complement(9499862..9506582)
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AA seq
628 aa
AA seq
DB search
MSTSWADSVAAENDNTRGGGTARPTRSTYVPPHLRNRPPSAEPMVGSGPGLSQGGPPPPV
NDRPVYGGPPGGSRWGGGGGGGGYGGGRGGIGGGRGGGWNNRSGGWDRGSREVNPFENDV
EEDPVEAFDQENTGINFDAYEDIPVETSGDNVPPPVNTFADIDLGNELNANIRRCKYVKP
TPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGQPPQRPRGYRTVYPLALI
LSPTRELSMQINEEAKKFAYQTGVRVVVVYGGAPINQQLRELERGVDILVATPGRLVDLL
ERARVSLEMIRYLALDEADRMLDMGFEPQIRKIVEQTDMPPRGVRQTLLFSATFPKEIQR
LASDFLGNYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDLLHAQRANGVQVKQSLTL
VFVETKKGADALEHWLSINGFPATSIHGDRSQQERELALRSFKTGNTPILVATDVAARGL
DIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSLARPLSELMQEANQ
EVPEWLQRFASRASYGGGGGRNRRGGGGRFGGRDFRRDGRGGGGGGGGGNVTDYYGGGNN
SGYYGGGGGGGGGAGGGGGGGGYTSAWD
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttcatgggcggattcggtggcggctgagaatgacaatacgaggggtggcggt
actgcacgtcccacgaggtcgacgtatgtgcctcctcaccttcgtaacaggccaccctca
gctgaacctatggtagggtcgggtcctggtttatcgcagggtggacctcctccacctgtt
aatgatagaccggtttatggtggaccacctggtgggtctagatggggtggtggtggaggt
ggaggtggatatggcggtggtcgtggtggtattggtggtggtcgtggtggaggatggaat
aataggagtggtgggtgggaccgtggtagtagggaagttaatccgtttgagaatgatgtt
gaagaagatcctgtcgaagcgtttgatcaagagaataccgggattaactttgatgcttat
gaggatatccctgtggagactagtggagataatgtgccacccccggtaaacacatttgct
gatattgaccttggaaatgaacttaatgcaaacattagaaggtgcaagtatgtgaagcct
acgccagttcagcgttatgctataccaatttctcttgctggacgggatttgatggcatgt
gctcagactggttctggaaaaactgcagctttctgttttccgattattagtggtataatg
aagggccaaccaccccagaggcctcgtgggtatcgaactgtttatccacttgctcttatt
ctgtctcctacaagggagttatcaatgcagataaatgaggaagcaaaaaagtttgcatac
caaaccggagtcagagtggtggttgtatatggaggagctccgatcaaccaacagttacgg
gagctcgaaagaggagttgatattcttgttgcaacacctggaagactggttgatttgctt
gagagggctagagtgtctctagaaatgataagataccttgcacttgacgaagctgataga
atgctggatatggggtttgaacctcaaatcagaaagatagtagaacagactgacatgccg
cccagaggtgtgaggcagacgctgctgttcagtgcaacctttccaaaggagattcagagg
ctggcttctgattttttgggcaactacatttttcttgctgtgggaagggtgggttcaagc
actgatttgattgttcagagggtggagtttgtgcatgaatctgacaagaggagccattta
atggaccttctacatgcacaacgtgcaaatggagtacaagtcaagcaatcattaacactt
gtatttgtggaaaccaaaaagggggctgatgcgttagagcattggttgagtatcaatggg
tttccagccactagcattcatggtgatagatcgcagcaggaaagagaacttgctctaagg
tccttcaaaacaggaaatactccaattctggttgcaactgatgtggcagcacgaggactg
gatattccccacgttgcccatgttattaacttcgatcttcccaatgacatagatgactat
gtacaccgcattgggcgtacaggacgtgctgggaaaagtggattagctacagccttcttc
aatgaaaacaactcgtcactagcaagaccactctccgagcttatgcaagaagctaaccag
gaagtgcctgagtggctacaacgttttgcatctcgcgcctcttatggtggtggtggtggc
agaaaccggagaggtgggggtggtcgttttggcggtcgtgacttcaggagggatggaaga
ggaggcggcggcggtggaggtggcggcaatgtcactgactactacggagggggcaataac
agcggatactatggcggcggtggtggcggaggtggtggtgctggtggaggcggaggcgga
ggcggttacactagtgcctgggactag
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