Silene latifolia (white campion): 141642237
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Entry
141642237 CDS
T11116
Name
(RefSeq) putative pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf00040
Pentose and glucuronate interconversions
slaf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
141642237
Enzymes [BR:
slaf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
141642237
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
141642237
NCBI-ProteinID:
XP_074307061
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Position
2:10534804..10540365
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AA seq
450 aa
AA seq
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MASSSFTSRFTSLLLLLVLLLSVAIVATALRSSPRSSETVKLEQSLKNTTMADKMEVVVE
KSDAVNEHAVENPEEVVAMVHMSIQNSTQRRNLGYFSCGTGNPIDDCWRCDPNWHKNRKR
LADCGIGFGRNAVGGRDGRFYVVTDPRDDDAVNPRPGTLRHAVIQEEPLWIVFQRDMVIQ
LKEELIMNSFKTIDGRGSNIHIANGACITIQYVTNIIIHGIHIHDCKPTGNAMVRSSPSH
FGWRTMADGDGVSIFGASQIWVDHNSLSHCADGLVDAVMGSTAITISNNHFAHHNEVMLL
GHSDSYVRDKQMQVTIAFNHFGSGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTI
NSQGNRYAAPTNPFAKEVTKRVDTAEGQWKGWNWRSEGDLMLNGAYFTCSGAGAGASYAR
ASSLGAKSSSMVGSITANAGPLSCRRGNKC
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcttccttcacttctcgtttcacttctctccttctcctcctcgtactcctc
ctttccgtcgccattgtcgccaccgctctccgctcttctcctcggtcaagtgaaacagtg
aagttggagcagagcttgaagaacacaacaatggcggacaaaatggaggtggtggtggaa
aaaagtgatgcagtaaatgaacatgcagtggaaaaccctgaagaagttgttgccatggtt
cacatgagcatccagaacagcactcagaggaggaatctgggttatttttcatgtggaaca
ggaaatcccatcgatgattgctggcggtgtgacccaaactggcacaagaaccgcaagcgc
cttgctgactgtggcattggctttggtagaaacgcagttggaggacgggatgggcgattc
tatgtcgtcacagacccacgtgatgatgatgcggtcaaccccaggcctggaactctgaga
catgcagtcatccaagaagagcctctgtggattgtgttccagcgtgatatggtgattcaa
ttgaaggaggagcttataatgaacagtttcaagacaattgacggtcgtgggtcaaatatt
cacatagcaaatggtgcctgcatcacaatccagtatgtgacaaacatcattatccatggt
atccacatccacgactgcaaacctaccggtaatgctatggtcaggagttcgccttctcat
tttggatggagaacaatggcagatggagatggtgtctcaatatttggtgcaagtcaaatt
tgggtggatcataattcactctctcattgtgctgacggccttgttgatgctgtgatgggc
tcaactgccatcaccatatctaacaaccacttcgcgcaccataatgaggtgatgctgttg
ggtcatagtgattcctatgtgagggacaaacagatgcaagtaactattgctttcaatcat
ttcggttcaggcctcatccagagaatgccaaggtgtcgccacggttatttccatgtggtg
aataacgactacacacactgggaaatgtatgccattggtggaagtgcaagtcccactatc
aacagtcagggtaaccgatatgctgccccaaccaatccttttgctaaagaggtgacaaag
agggtagacacagctgaaggacagtggaaaggttggaactggagatctgagggagacctc
atgctcaacggggcctactttacctgttctggagccggagcaggagcaagctacgcaaga
gcctcaagcttgggtgccaagtcatcttccatggtcggatctatcacagccaacgcggga
cctctttcctgtcgcagaggcaacaagtgctag
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