Silene latifolia (white campion): 141642247
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Entry
141642247 CDS
T11116
Name
(RefSeq) chaperonin CPN60-2, mitochondrial-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141642247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141642247
03110 Chaperones and folding catalysts [BR:
slaf03110
]
141642247
03029 Mitochondrial biogenesis [BR:
slaf03029
]
141642247
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
slaf04147
]
141642247
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
141642247
Messenger RNA biogenesis [BR:
slaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
141642247
Chaperones and folding catalysts [BR:
slaf03110
]
Heat shock proteins
HSP60 / Chaperonin
141642247
Mitochondrial biogenesis [BR:
slaf03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
141642247
Exosome [BR:
slaf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
141642247
Exosomal proteins of other body fluids (saliva and urine)
141642247
Exosomal proteins of breast cancer cells
141642247
Exosomal proteins of colorectal cancer cells
141642247
Exosomal proteins of bladder cancer cells
141642247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Flavoprotein
Motif
Other DBs
NCBI-GeneID:
141642247
NCBI-ProteinID:
XP_074307075
LinkDB
All DBs
Position
2:complement(10728642..10734472)
Genome browser
AA seq
576 aa
AA seq
DB search
MFRAVATLASRARSTSTRNVANLKWSRNYAAKEVRFGEDARKSMLKGIEELADAVRVTMG
PRGRNVIIEQSYGAPKVTKDGVTVAKSIEFKDRYKNLGASLVKQVANSTNDVAGDGTTCA
TVLTRAILIEGVRSVGVGMNAMDLRRGMTMAVDAVVNYLKSRARMISTSEEIAQVGTISA
NGDREIGELIAKAMEKVGKEGVITIQDGKTLYNELEVVEGMKLDRGYISPYFITNQKTQK
CELDDPLILIYEKKITSVNAVVKALELALKRQKPLLIVAEDVDSEALATLILNKIRAGLK
VCAVKAPGFGENRKANLQDLATLTGGQVITEELGMNMEKVDLDMLGSCKKITISKDDTVI
LDGSGDKKSIEERCEQIRSGIELSTSDYDKEKLEERLAKLSGGVAVLKIGGASEAEVGEK
KDRVTDALNATKAAVAEGIVPGGGVALLYASKELDKVQTANYDQKIGVQIIQAALKTPVY
TIASNAGVEGALIVGKLLEQDDHDLGYDAAKGEYVNMVKSGIIDPLKVIRTALADAASVS
ALMTTTEAVIVEAPKDEKDSSPPMGGGMGGMGGMDF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtgcagtcgccaccctcgcttcccgtgctcgatcaaccagcactcgcaatgtt
gcaaatttgaagtggagcaggaattatgcagctaaggaagtaaggttcggtgaggacgcc
cgtaagtcaatgttgaagggtatcgaagagctcgcagatgcggttagagttacaatggga
ccaagggggcgtaatgtgataattgaacaaagctacggtgctcctaaagtgacaaaagat
ggtgtgaccgttgccaagagcattgaattcaaagatagatataagaacttgggtgccagc
cttgttaagcaagttgccaactctaccaatgacgttgccggggatggtactacatgtgcg
acagttcttactcgtgctatattgattgagggagttagatctgttggagttggaatgaac
gcaatggaccttcgacgtggtatgacaatggcagttgatgctgttgtaaactacttgaag
agcagagcaaggatgattagtacctccgaggagattgctcaggttggtactatctctgct
aatggtgaccgggagattggtgagttgattgcaaaggctatggaaaaggttggcaaggaa
ggtgtcatcacaatccaagatggcaaaacattgtacaacgagttggaagttgttgaaggt
atgaagctggacaggggttacatatctccctacttcatcaccaatcagaaaactcagaaa
tgtgaattggatgacccacttattttgatctacgaaaagaaaattaccagtgtaaatgct
gtagtgaaagctctggagctggccttaaagcgacaaaagcctttattgattgttgcggaa
gatgttgacagcgaggccttggcaactcttattttgaacaagattcgtgctggtctaaag
gtttgtgctgttaaagctcctggatttggtgagaataggaaggccaacttgcaggatctt
gcaactctcactggaggacaagtgataactgaagaacttggcatgaatatggagaaagtt
gatcttgatatgcttggttcatgcaaaaagattactatctcgaaggatgataccgtcatt
cttgatgggtcaggtgacaaaaagtccattgaggagagatgtgaacagataagatctgga
atcgaactaagtacatctgattatgataaagagaagttggaggagaggttggctaagctt
tccggcggagttgctgttttgaagatcggaggagctagtgaagctgaagttggtgaaaag
aaggatcgagtgaccgatgccctaaacgccactaaagccgcagttgccgaaggtattgtg
cctggtggtggtgttgctctcctgtacgcctcaaaagaacttgataaagtacaaacggcc
aactatgaccaaaagattggcgtacagatcattcaagcagcccttaaaactcctgtatac
actattgcatcaaatgctggtgtcgagggtgctctcattgttggcaaattgctggagcag
gatgaccatgaccttggttatgatgctgccaaaggagaatacgtaaatatggtgaaatca
gggatcatagatcccttgaaggttattaggacagctttggctgatgccgccagtgtgtcg
gccttgatgacgacgactgaggctgttattgtggaggcacctaaagacgagaaggactca
tctccacccatgggcggcggtatgggtggtatgggaggcatggacttttag
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