Silene latifolia (white campion): 141642365
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Entry
141642365 CDS
T11116
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141642365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141642365
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
141642365
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
AmiA-like
Motif
Other DBs
NCBI-GeneID:
141642365
NCBI-ProteinID:
XP_074307249
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All DBs
Position
1:complement(25536141..25537517)
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AA seq
458 aa
AA seq
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MATMSMSIPFHVPNIPKPQDIYSIKPDNSNTTRFVVSQLPNELTHYPASDLVDQPPHPNK
PIIKPGDLDTTPFTYVDTVQGLECLRSKLEVADEFAVDLEANNYRSFQGLTCLMQISTRT
EDFVVDTLKLYHFIGQYLGAVFLDPKKRKIMHGAGNDVLWLQRDFGIFVCNLFDTMQASR
VLKMERNSLAHLLVYFCGVSANKQFQTSDWRIRPLPREMLHYAREDTHYLLYIYDKMRSQ
LVAGCGSTEYDDPLLEVYSRSHNVCKSLYKKELFNEDSYKKLFGLGDAGLDSDQTNVAAR
LCKCRDRIARDKDESTGYVLPNKLLIELCQKLPRTESEFLAIAEAHNCQNHPLILDNIGE
LLKIIGNLDSNQNVAQIDYSKQKGMPEDANTKQSHLEMQYMYQMNRPQGYYVTAVYPQPQ
ACYVNVVYPPGYYISAKHPELMNPVYCTVPQYYQYQIC
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaatgagtatgagtatcccttttcacgtacctaatatccccaaaccacaggat
atctactctattaaacccgacaactctaacaccactcggttcgtcgtatcccaacttcca
aacgagcttacacattatccagcctccgatttagttgatcagcctcctcaccctaacaaa
cccattattaaacctggcgacctagatacaacacctttcacctacgttgatacagtccaa
gggctggagtgcttgaggagcaagctagaggtggcggacgagtttgcagtagatctcgag
gcgaacaactaccgttcttttcaaggtctgacatgtctgatgcagatttcgactaggacg
gaggattttgtggttgatacactcaagttgtaccactttattggtcagtacctaggggcc
gttttcttggaccccaagaaaaggaagattatgcacggggctggaaacgacgtgttatgg
ctacaacgtgatttcgggatttttgtttgtaatttgtttgataccatgcaagcgtctcgg
gtgttgaaaatggagcgcaatagtttggctcatctccttgtttacttctgtggagtgtct
gcaaataagcaatttcagacttcggactggaggattcggcctttgcctcgtgagatgctc
cattatgcgcgtgaagacacgcattaccttctgtacatttatgacaagatgaggtctcag
cttgttgctgggtgtgggtccactgaatatgatgatccgttgcttgaggtgtattcgagg
agccataatgtatgcaaatcgctctataagaaagagctgtttaatgaggattcatataag
aaattgttcgggttgggtgatgctggattggattcagatcaaactaatgttgctgcaagg
ctatgtaagtgtcgggaccgcattgcacgagacaaggacgagagtactgggtatgtcctg
cccaacaaattgttgatcgagttgtgtcaaaaactcccaagaacagaatccgagttccta
gctattgccgaagcacataactgccaaaatcaccccttaattctggataacattggtgaa
cttctgaagattattggaaacttagatagcaaccagaatgtggctcaaatcgactactca
aaacaaaagggtatgccagaggatgccaacaccaaacagtcgcatctcgagatgcagtac
atgtatcagatgaacaggccacagggttattatgttactgctgtatatcctcagcctcag
gcatgttatgttaatgttgtttacccacctgggtattacatttctgcaaaacatccggaa
cttatgaatccggtgtattgtactgttccccaatattatcaatatcaaatctgctga
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