Silene latifolia (white campion): 141642899
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Entry
141642899 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141642899 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141642899
Spliceosome [BR:
slaf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
141642899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
DUF7192
Motif
Other DBs
NCBI-GeneID:
141642899
NCBI-ProteinID:
XP_074307982
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All DBs
Position
2:113799495..113828618
Genome browser
AA seq
1107 aa
AA seq
DB search
MAVGSNDGFHELELNQVVPQHSMDFDAWTALISTVESIYNDDVDKISLAYDTFLSEFPLC
YGYWKKYAEHHARLCSVENVVQVFERAVESVPYSVGLWVDYCCFSISSFADPSDVCRLFE
RGLSFVGKDYLCHLLWDRYIEFEYSQQHWDSLANIYIQTLKFPTKKLQRYYESFKKLVSI
WEEETGLQEGSHTGLQSQCESDDETMMSGNAEISHVTSNLLDPSTRIEALQKYKLIGERY
YRKACDLDAKLRKFEQNIHRPYFHVKPLDDSQLENWHQYLDLVEMEGDFDWAVKLYERCL
VSCAHYPEFWMRYVYFVEANGGKEIASDAMDRATNIFLKNSPGIHLFNAWFKENNGDIEG
AHEAVLQCDQEIGSHFVDMVRRKANLEKRMGNYAKASDIYKASLDLAAVKSPGTLPMLYL
HYARFQCMVRNSVEGAREVLLDGIQRVPCSKLLLKELLHFSSMHDGAKQVNLLDSLIARA
LTFGPDASGDLSMKDREQISTLYLEFIDSCGSIHDIRKAWIRHLKLFPHLVREQSSLKNS
ADAGAVLKMVAEGRPDFFDLVFQKSSVENADKNEQTMNDQAQFEPGDEGLDCLQVEVELS
PSKSHIEDQAIEHDNEKPAQSVDNCGSNGIKKQQELIAQHEKPISKDGRSSNPQDDESPF
VNECKTLPVEASPEGIPMPIPVKPLDNDAAETCNDSSCPTRRQHKDFSPVSSPTRTLDRE
GSRFQLNSSNRGRSEYGSPENSGDRRDRSLSPRRRSSHGYSDSQHHRQRSLSPRRHNSRW
NSDERWHRDRRQPNRRYPRYPDNSRGPRDGRTLNQHIGVFGNKGQSHNVQNQVVGSAPQD
LLPLQPSVYTQAQVNQYPLPNNNEQYGDVQNTQLYNQMWQYYYQQQQLLLQQQSASQLPQ
SQQMAPTQQLQQQVQNSGQEQHVPTHQQSQVDPNQMWQYYYQQQQQQQQQQLVSQLPQPH
QVPPHQQNPDQEQHMPTHQQNPGQVVPSQQQQQQSYQYQQLQQQQYLLYLQQLQQYQQSQ
QHPGSVQDQTLPQKQVELPENQHDQQMLPGDHYQNEDLSSQKDDGPSHVDSKANHEQFLF
CLQYKGIDNQASASGTSGATDQLPEIE
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggcagttggctcaaatgatgggttccacgagcttgagctcaatcaagttgttcctcaa
cattcaatggactttgatgcatggactgcactcatctcaactgttgaatcaatctacaat
gatgatgtagataaaatcagtctggcatatgacactttcttgtcagagttccccctctgc
tacgggtactggaaaaaatatgctgagcatcatgcacgcttatgcagtgtggaaaatgtt
gttcaagtttttgaaagagctgttgaatcagttccatactcggttggtttatgggttgat
tattgttgcttcagcatatcatcttttgcagatccatctgatgtttgcagattgtttgaa
agagggctgtcatttgtggggaaagattatctatgccatctattatgggatagatatatt
gagtttgagtattctcaacagcattgggactctttggccaacatttatatacagactctg
aagtttccaacgaagaagttacaacggtactatgaaagtttcaagaagttggtgtccata
tgggaagaggagacaggacttcaggaaggttctcatacagggttgcagtcacaatgtgaa
tcagatgatgaaactatgatgtcgggaaatgctgaaatctcccatgttacaagtaatttg
cttgatccatccactagaattgaagcactgcagaaatataagttaataggagaacgttat
tatcgaaaagcgtgtgacttggatgcaaaattacgaaagtttgaacaaaacatacacagg
ccttattttcatgtgaagccacttgatgatagtcaactagagaattggcatcagtatttg
gatcttgttgaaatggaaggtgattttgactgggctgtgaaactgtatgaaagatgttta
gtttcttgtgcccattatcctgagttttggatgcgctatgtctactttgtggaggccaac
ggagggaaggagatagcaagtgatgctatggaccgagcaaccaatatctttctgaagaat
tcccctgggattcatcttttcaatgcttggtttaaagagaacaatggtgatattgaaggt
gcacatgaagccgttcttcagtgtgaccaagaaattggatctcatttcgttgacatggtt
aggaggaaggctaatctggaaaaacgcatggggaattatgccaaagcatctgatatatac
aaggcatcacttgatttggctgcggtgaagagtcctggcacactaccgatgttgtatctg
cattatgcacgtttccaatgcatggtcagaaatagtgtggaaggtgcaagagaagttttg
ttggacggtattcaacgcgtgccttgctcaaaattactcctcaaggaacttctgcatttt
tcatcgatgcatgacggagcaaagcaggttaaccttttggattcacttattgctcgggca
cttacttttgggccagacgcttcaggtgatcttagcatgaaagatcgtgagcaaatttca
acattatatttggagttcatcgactcttgtggaagcatccatgatatacggaaggcatgg
attcgtcatctgaaactctttcctcatttagtcagagagcagtcttccctcaagaattct
gctgatgctggtgctgtactaaagatggttgctgaaggtagacccgatttttttgacctg
gtctttcaaaagtcttcagtggagaatgctgataaaaatgaacagactatgaatgaccag
gcacagtttgaaccgggtgatgaaggtctagattgtttgcaggtagaagtagaactctca
ccctcaaagtcacacatagaggatcaagctatagaacatgacaatgaaaagcctgcacaa
tctgttgacaattgtggctcaaatggcattaaaaaacagcaagagctgatagctcaacac
gagaagccaatctcaaaagatggtcgttcatcaaatcctcaggatgatgaatctcctttt
gttaacgaatgtaaaactctacctgttgaagcttctccagaagggatccccatgccaatt
cctgtaaaacctttggataatgatgctgctgagacatgcaacgattcttcctgtcctaca
cgtagacaacacaaggatttctcgccagtatcatccccgactcgtactttagatagagaa
ggtagccgcttccagctcaattcatctaatagaggtcgttcagagtatggttctccagag
aattctggggaccgacgggataggtctctttctccaagaagacggagttctcatgggtat
tcggatagccaacaccataggcaacggtccctttctccacgaaggcataactctcgctgg
aattcagatgaacgttggcatcgagacaggcgtcaacccaaccgtcgttatccccggtat
ccagataattctcgaggtcctagagatggcaggacgctaaatcaacatataggcgtcttt
ggcaacaaaggacagtcacataatgttcaaaatcaggttgttgggtctgctcctcaagac
ctgcttcctcttcaacccagtgtgtatactcaagctcaggtcaaccaatatccattgcct
aataataatgagcaatatggggatgtgcagaacactcaattgtacaatcagatgtggcag
tattattatcagcaacaacaacttctcctgcaacagcaatcagcatcgcagctgccacaa
tcacaacagatggcacccactcagcagcttcagcaacaggtacaaaactcaggacaggag
caacatgtgccaactcatcaacagagtcaggtagatcctaatcagatgtggcaatattat
tatcagcagcagcagcagcaacaacaacaacaactagtatctcagctgccacaaccacac
caggtgccacctcatcagcaaaatccagatcaggagcaacatatgccaactcatcagcaa
aatccaggtcaggtagttcctagtcagcaacagcagcagcaatcatatcaataccagcaa
ctgcagcaacaacagtacttactctatcttcagcaactacagcaatatcagcagtcacaa
cagcacccaggatcagtgcaagatcaaacattaccccagaaacaagtcgagttgcctgag
aaccaacatgatcaacaaatgttgcctggggatcattatcagaatgaggatttgtcttct
cagaaggatgatggtccatcacatgttgactcaaaggcaaaccatgaacagtttttattt
tgcttgcagtacaaaggaatagataatcaggcctcagcatctggaacatctggagctaca
gatcagctgcctgaaattgaatga
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integrated database retrieval system
