Silene latifolia (white campion): 141643161
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Entry
141643161 CDS
T11116
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141643161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
slaf03009
]
141643161
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
141643161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_2nd
Utp13
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_Nup120_160
NBCH_WD40
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_WDR41
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_SPT8
Cytochrom_D1
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_ACSF4
eIF2A
Nbas_N
Beta-prop_NOL10_N
UTP15_C
WDR54
Beta-prop_RIG_1st
Beta-prop_IP5PC_F
SGL
Motif
Other DBs
NCBI-GeneID:
141643161
NCBI-ProteinID:
XP_074308302
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All DBs
Position
2:complement(155370799..155379977)
Genome browser
AA seq
882 aa
AA seq
DB search
MAAITLPLKKSYRCTQSLQQFFTGGPFAVSSDGTFIACACNDTIKIVDSSNASIRATLEG
DSEAVTALAISPDDAFLFSASHSRQIRVWDLNSLKCVRSWKGHDDGPVLAMACDASGGLL
ATGGTDRKVRVWDVDGGFCTHYFKGHKGIVHCIMFHPDPNNLILFSGSDEGSVRAWDLVA
KKCAATMENHNSAVVSLAFSEDRRFLLTAGRDKVVNVWDLISYASVTTIPTHEVLVAVCV
IHSGTPFYDSFLLDKPGKSKSMEEVYFLTGGERGIIRIWKWNSGRAVCLFEQKTSDVAFS
SDKDDQRRGFTAAHMLPSDQGLLCVTADQQFLFYSPLKHSEEVLDLGLTKRLIGYNEEIV
DMKFLGEDENFLAVATNLEQVQVYDLASMSCSYVLAGHSGTILSLDTCIGSSGRTYIVTG
SKDNSVRLWDTETKMCLGVGVGHLGAVGAVAFSKKQRNFFVSGSSDHTLKVWSFEGLIGN
SDKPDSLKVKGAVGAHNKDINSVAVSPDDSLVCSGSQDRTARLFKLPELVEVAALVGHKR
GIWIVEFSPVDPCVLTASGDKTIKLWSVRDHSCLKTFEGHTSGVLRASFITRGAQLVSTG
ADGVLKLWSVKSSECIASYDQHEDKVWALAVGRKTEMLATGGSDAVINLWNDSTAVEKEE
AFRKEEEGVLRGQDLENAIVDADYAKAILLAFELKKPHKLFELLSELYRKNIAIDHVRNA
LKPLGKEELRRLLEYIREWNTKPKLCHVANSVLLQAFSVHPPTDIDEVKGIGELLEGLIP
YSQRHYNRIERVARNLFLLDYTLNGMSILEPEGDSRVPSSTSERNLDRDKASDVQEEIIT
KTTETKPNKSSKKRKSEKSTKTRTKMAKTLPSTEASTISLQA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggcggccattactctaccattgaagaagagctacagatgcactcaatctcttcaacaa
ttcttcaccggtggtcccttcgcagtctcctctgacggcaccttcatagcttgcgcctgc
aacgacaccattaaaatcgtcgattcctctaatgcttctatcagagccaccctcgaaggc
gattccgaagccgttaccgctctcgctatttctcctgatgatgctttccttttctctgct
agtcatagtcgtcaaattagggtttgggaccttaattcgctcaagtgtgttcgctcttgg
aagggacatgatgatggtccagtgttggcaatggcatgtgatgcgtcgggtggtttgctc
gccactggtggaactgaccggaaagtgcgtgtatgggacgtagacggtggattttgcaca
cattatttcaaggggcataaagggattgttcattgcattatgttccatcctgatcccaat
aacctcattcttttctcgggaagtgatgaaggcagtgtccgggcctgggatcttgtagct
aaaaagtgtgctgctacaatggagaatcacaactctgcagtggtgtcattagcgttctca
gaagatagaagattcctgctcactgctggaagagataaggtggtcaatgtgtgggacctt
attagctatgcttccgtgacgacgataccaacacacgaagttcttgtggctgtttgtgtt
attcattctggaactccattttatgatagttttctgttggacaagcctgggaagagtaaa
agtatggaagaagtgtatttcttaactggcggtgaacgtggaattattcgtatatggaaa
tggaactctgggcgtgcagtttgtttatttgagcaaaagacttcagatgtagcttttagc
tcagacaaggatgaccagagaagaggcttcactgcggcacacatgctgccatctgatcag
ggtttgttgtgcgttactgctgaccagcagtttcttttttactcacccttgaagcattct
gaggaagttctagatttgggccttactaagcgacttattggatacaatgaagaaattgta
gatatgaagtttttaggtgaagatgaaaactttcttgctgttgccaccaatcttgaacag
gtgcaagtttatgaccttgcgtcaatgtcatgttcttatgtacttgctgggcattcagga
acaattttaagtcttgacacctgcattggaagttcaggaaggacatatattgtgactgga
agcaaggacaatagtgtcagattatgggatacagaaaccaaaatgtgtttaggggttggt
gttggtcacctgggagctgttggagccgttgctttttcaaagaaacaacggaactttttt
gtcagtggtagtagtgaccatacactcaaggtgtggagctttgaaggtctcatcggcaat
tctgacaagcctgacagtcttaaagtaaagggagctgttggggcccataataaggatatt
aactccgttgctgtttcaccagatgacagtctagtttgtagtggttcacaggatcggact
gcccgtctgttcaagcttccagaacttgtagaggtggcggcactggtgggccacaaacgg
ggaatttggattgtcgagttttctcctgttgacccttgtgttttgacggcatctggcgac
aaaaccataaaattatggtcagtgcgtgatcattcctgcctaaaaacattcgagggccat
acatctggtgtacttagagcttcctttatcacccgtggggctcagcttgtatcaactggt
gctgatggtgttctgaagctatggagcgtaaaatctagtgaatgcattgccagttatgat
cagcacgaggacaaggtatgggccttggcagttggaagaaaaacagaaatgctcgctact
ggaggcagtgatgctgttataaatctatggaatgattccaccgctgttgaaaaggaagag
gcattccgcaaagaggaagaaggggttttgcgaggacaagatcttgaaaatgctattgtg
gatgcggattatgccaaagctatcctgctcgcctttgagcttaaaaaacctcacaagctc
ttcgaactactgtcagaattgtacaggaaaaacatcgcaatagatcatgtgagaaatgct
ctaaagcctcttgggaaggaggaacttcgtcgacttcttgaatatattagagaatggaat
accaagccaaagctgtgccacgtggctaactctgtacttttacaggctttcagtgtgcat
ccacctacagacattgatgaggtgaaaggcataggagaacttcttgaagggctcatcccg
tattctcagaggcactacaatagaatcgaaagggtagcaagaaacttattcttgttagat
tacactcttaatggcatgtctatccttgaaccagagggcgatagtagagtaccgagtagc
acttctgaacgaaatttggacagggataaagcatctgatgttcaagaagagatcatcaca
aagacaaccgaaacaaagcccaacaagagctcaaagaaacgaaaatctgagaagtcaaca
aaaactcgtaccaagatggctaaaactttgcctagcacagaagcttcaaccatatcattg
caggcatag
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