Silene latifolia (white campion): 141643278
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Entry
141643278 CDS
T11116
Name
(RefSeq) putative rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
slaf Silene latifolia (white campion)
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
141643278
Enzymes [BR:
slaf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
141643278
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
Endotoxin_C
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
141643278
NCBI-ProteinID:
XP_074308460
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Position
2:complement(165493897..165503567)
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AA seq
676 aa
AA seq
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MKLEFHQFIRQLFVVVIIITLHLHLSLLASSSPINLKTAQAVNLDVRENEVVIDNGILQL
TIANPEGYLTGVCYAGVDNLLETRNPGSNRGYWDVVWDTADGHNGSTDWILGSVFKVIVQ
NEDQVEVSFTNKWDSTAWNTSDTNWRLPVNVDRRYIMLRGSSGFYAYAMLEREQGYPASN
IYQIRTVYKLDQDRFHYMAISDERQRMMPMPQDRVSGLPLAYKEAVLLTDPVDPDLRGEV
DDKYQYSCEDKDNRVHGWISFEPQIGFWVITPSNEFRSAGPVKQDLTSHVGPISLAMFHS
AHYAGADVTMKFQQGEPWKKVFGPYYVYLNSVSADTDIQSLWDDAKHQMAQEVRSWPYEF
PSSVNFPKSVQRGFVFGRLLVHDRYRWKTLRSASSASIGLAVPGDAGSWQTETKGYQFWS
QADRNGRFVIKGIHEGVYNLFAWVPGVIGDYVYVENITITPGSAIDLGDLVYEPLRNGPT
LWQIGFPDRTALEFYVPAPSRLFVNKLYTDNDVNKFRQYGLWERYADLYPDEDLIYTVGV
SDYHRDWFFAHVTRKVDNDTYKPTTWQIIFHLNDLLLSTNYTLRIALASASRSEVQVRFN
DPELSEPHFSTMLIGTDNAIARHGIHGLYRLYNIDVPSEWLTVGNNTIYLKQSRHIGPFE
GVMYDYIRLEGPPRRR
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggaatttcaccaatttattcgacaacttttcgttgtcgtcatcatcatcaca
ttgcatcttcacttatctttgcttgcttcttcttctcctattaacttgaaaactgcgcaa
gccgtcaacttagacgtaagggagaatgaagtggtgatagacaatggaattctccaactc
acaattgcaaatccagagggctatctcaccggtgtttgttacgctggagttgacaattta
ctcgaaactcgtaatccaggatcaaacagagggtactgggatgtagtctgggacaccgca
gatggtcataatggttcgactgactggattctaggatcagtcttcaaagtcatagttcaa
aatgaggatcaagtggaggtctcgttcacgaacaaatgggattcaactgcatggaataca
tcagatacaaactggaggcttcctgtcaatgtcgatcgtaggtatattatgcttcgtgga
tcctctggattctacgcctatgcaatgttagagcgcgaacaaggatatcctgcatcaaat
atctaccaaatcagaactgtttataagcttgatcaagacaggtttcactacatggctatt
tcggatgagaggcagaggatgatgcctatgccacaagatcgggtgtctggtctacctctt
gcttataaagaggctgtcctcctcaccgacccagttgatcctgatctcagaggagaggta
gatgacaaatatcagtactcatgcgaggataaggacaatagagtgcatggatggatatcg
ttcgaaccacaaataggattctgggttataacaccaagcaacgagttccgttctgctgga
cctgtcaagcaagatctcacatcccatgttggcccaatctcattagctatgttccacagt
gctcactatgccggtgcagatgtcaccatgaaatttcaacagggcgagccatggaaaaag
gtgtttggaccctactatgtttacctaaattcagtttctgcggacacggatattcaaagc
ctctgggacgatgctaaacatcagatggcacaagaagttagaagctggccttatgaattc
ccttcatcagttaatttccccaagtccgttcagcgtggatttgtttttggccggctactg
gtgcatgatagataccggtggaaaacactaaggtctgctagttctgcttcaattggattg
gcagtaccaggtgatgcaggatcctggcaaactgaaactaagggatatcaattctggagt
caagcagaccgtaatggacgtttcgtgattaaagggatacatgaaggtgtttataacttg
tttgcttgggttcccggtgtcattggtgattacgtctacgttgaaaacatcacaatcact
ccaggctctgcaatcgacttgggtgatcttgtatatgagcctcttagaaatgggccaaca
ttgtggcaaataggttttcctgaccgcaccgctctagaattctatgtacctgcgccaagt
aggttgtttgtcaacaaactctacacagacaatgatgtgaacaaatttagacaatatggt
ctctgggaaaggtatgctgacctttatcctgacgaagatcttatatacaccgtcggtgta
agtgactatcacagagactggtttttcgctcacgttaccaggaaggtggacaatgatact
tacaaacccaccacatggcagataatatttcaccttaacgacctattactgtccacaaac
tatacattgcgaatcgccttggcatctgcttcgaggtctgaagtgcaagtgcgattcaac
gatccagagttgagcgaaccccattttagtacaatgttaataggtacagataatgcaatt
gcaagacatggcattcatgggttatacaggctgtacaatattgacgttccgagtgaatgg
cttactgttggaaacaacaccatatatctcaagcaaagtagacacattggtccctttgaa
ggggttatgtatgattatatacggttagaaggaccaccacgaagaagataa
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