Silene latifolia (white campion): 141643436
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Entry
141643436 CDS
T11116
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141643436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141643436
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
141643436
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Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Toxin_R_bind_C
OB_RNB
Motif
Other DBs
NCBI-GeneID:
141643436
NCBI-ProteinID:
XP_074308701
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All DBs
Position
2:complement(176047278..176060202)
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AA seq
932 aa
AA seq
DB search
MLQSKTFSKKTRGGKVQKIVREHYLRDDIYCGASICKVCDASVSRLSADASTILVLDTNV
VLNQIDLLEKTAIDDVVVLSVVLDEVQNKNKSVYKRLRDICSNPSRKFYVFSNEHHKETY
VKAMAGESPNDRNDRAIRVAAQWYQKHLNSAVRVLLITNDRENKRKACEEGIAAETVESY
VRSLGQPELLDSLRQPSSEDVAMDDVEDLRPSKKQAIYSEHKPMSEITAGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIHRRANMNRAFDGDIVAVELLAQDQWHGDKSYIADED
EEDDGVHLPPSSADDAPRTTNVQGSNAEASPTSDRPCGCVVGIIKRNWHSYCGSLEPMNL
PAGSGGIAYPLFASKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDRFSRYPSGHYVKTIG
DINDRDTESEVVLIENDINSRPFSSQVLACLPPLPWSVAPEHISDPNREDLRSLRVFSVD
PPGCRDIDDALHCTPLLNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDM
LPKPLTEDICSLRSDVERLSFSVIWEMTPQADIVSSRFTKGIIKSCAALSYVEAQARMDD
SRLMDPVTTDLRNMNQLAKIMRQRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIREA
NQMVEEFMLAANISVAEKILKHYPFCSLLRRHPSPTREMLEPLLRTAAAIGLDLDVTSSK
ALADSLDRAVGNDPYFNKLIRILATRCMTQAVYFCSGDVSPPEYLHYGLAAPLYTHFTSP
IRRYADVIVHRLLAASIGISKLPVIFQDRPQLTSIADNLNYRHRNAQMAGRASVELHTLI
YFRKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLTAKGDKECGEWVVDEQHQQVKKVD
GTITYNVLQMVQIHMEVVEPQPNRPKLQLNLI
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgctccaaagtaaaaccttctccaagaagactagaggcggcaaagttcaaaagattgtt
cgggagcattatcttagagatgatatatactgcggagcttcaatttgcaaagtttgcgat
gcttccgtttcgcgtttgagtgccgatgcttccactattttagtacttgacacaaatgtc
gtactcaatcagattgatttacttgagaaaaccgctatcgatgatgtggtggtgctgtca
gtagtgttggatgaggttcagaataagaataagtctgtttacaaaaggcttagagatatt
tgcagcaatcctagtcgaaagttttatgttttctccaacgagcatcacaaggagacttat
gttaaagctatggctggagaaagtcctaatgacagaaatgatagagcaatccgggtggcg
gctcaatggtatcaaaaacatctaaattctgcagttagggttttactgattactaacgat
agagagaacaagaggaaggcatgcgaggagggcatagctgcagagacagtcgagtcatat
gtcagatcattgggtcaaccagagttgcttgattcactcaggcagccttcctcggaggat
gtggccatggatgacgttgaagacttaaggccttccaagaagcaagctatttacagtgag
cataaacccatgtctgaaatcactgccggtttacatcgcggcatttaccatcaagggaaa
cttcgtgtcaatcgttataatccatttgaagcatatgtaggcagtgagagcattggtgat
gagataatcatacataggcgagccaacatgaacagagcttttgacggtgatatagtggct
gttgaacttttggctcaagatcagtggcatggggacaaatcctatattgcagatgaagat
gaggaggatgatggtgtacatcttcctccaagcagcgctgatgatgctcctcgaaccaca
aatgtccagggatccaacgcagaagcttcacctacttctgatcgcccatgcggttgtgtt
gtgggtatcatcaaacggaattggcactcttattgtgggtctttggagccaatgaatctg
cccgctggtagtggtggcattgcatatcctttgtttgcttcaaaggataggagaataccg
aagattcgtatccaaactcggcaactcggaaatcttctggataagagaattattgtggct
gtggactcctgggaccgtttttcacgatatccttcaggtcattatgtcaagactatagga
gatattaatgatagggatactgaaagtgaggtcgtgttgatagagaatgatataaactcc
cggccattttcttctcaagtgttggcatgcttgccaccattgccatggtctgtggctcct
gaacatatatctgatcctaacagagaagacctaagaagtttacgagtttttagtgttgat
cctccaggttgccgagatattgatgatgcactacactgcacacctcttttaaatggaaac
tttgaagtgggtgttcacattgctgatgtgaccaattttgtccaccctggaacccctctt
gatgatgaggcttcacaaagggggacttcagtgtatctcgttgaaaggcgaattgacatg
ctccctaagcctttgaccgaagatatctgttctctgagatcagatgttgagaggctctca
ttttctgttatttgggaaatgacgccgcaggcagatattgtatcttctaggttcacaaaa
ggtatcatcaagtcatgcgcggcattgtcttatgttgaggctcaagccaggatggatgat
agtcgtttgatggatccagtgactactgacctaagaaatatgaatcagttagcaaagatt
atgaggcagagacgtattgatagaggagctttgacgcttgcttctgcggaggtcaagttc
cagattgatactgaaactcatgatccccttgatattggtatgtatcaaattcgtgaagcc
aaccaaatggttgaggaatttatgcttgctgctaatatttcggtggcagaaaaaatattg
aagcattatcctttctgttcattattaaggcgacacccttctcccacaagagaaatgctt
gagccactgcttcgaactgctgcagctattggccttgatttggacgtcacgtcatcaaaa
gcactagctgattctcttgaccgtgctgtggggaatgatccgtacttcaataagctgatt
cgtattctggcgacaagatgcatgacacaggcagtgtacttctgtagtggggatgtcagc
cctccagagtatctgcattatgggcttgctgcacctttgtacacacacttcacttccccc
atcagaagatatgctgatgtcatagtgcacagattgctagctgcatctatagggatatcc
aagcttccagtgatattccaggataggcctcaactcactagtattgctgacaatctgaat
tatcgacatagaaatgcccaaatggccggccgagcatcagtagaacttcatacactcata
tacttcaggaaacgacctactgacacagaggccagaattgtgaaaataagatccaatgga
ttcattgtatttgttcccaagtttggcattgaggggccggtttatttaactgcaaaaggt
gataaggagtgtggagagtgggtggtagatgagcagcatcagcaggtgaaaaaggtggat
ggtactataacttacaatgttctgcaaatggtccaaattcacatggaagttgtagaaccc
cagccaaaccgccctaaacttcagttgaatcttatatag
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