Silene latifolia (white campion): 141643834
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Entry
141643834 CDS
T11116
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141643834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141643834
03041 Spliceosome [BR:
slaf03041
]
141643834
03009 Ribosome biogenesis [BR:
slaf03009
]
141643834
03016 Transfer RNA biogenesis [BR:
slaf03016
]
141643834
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141643834
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
141643834
Spliceosome [BR:
slaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141643834
Complex C
U4/U6.U5 tri-SnRNP related factors
141643834
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
141643834
Transfer RNA biogenesis [BR:
slaf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
141643834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
CENP-F_leu_zip
nSTAND3
Motif
Other DBs
NCBI-GeneID:
141643834
NCBI-ProteinID:
XP_074309255
LinkDB
All DBs
Position
2:complement(187147986..187158519)
Genome browser
AA seq
1011 aa
AA seq
DB search
MSGNNTPLSSVKRKSMEEGDPSTTMESNSPPQKIHRENDDENNNININENDANNIACFHD
VSYPEGYTPPSPSSSSSSNNGIGPAKEFPFTLDPFQAEAIKCLEHGESVMVSAHTSAGKT
VVASYAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMT
TEIWRTMQYKGSEVTREVAWAIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPN
AKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGKGLYLVVDEKAKFREDSFQKALN
ALIPAAEVDRKKKWQKGVVVGKVGEESDIFKLVKMLIQRQYDPIILFSFSKRECEFLAMQ
MAKMDLSGDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKE
VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAG
RRGIDERGICILMVDEKIEPSTAKSMLKGNADSLNSAFHLSYNMLLNQIRCEDGHPENLL
RNSFYQFQSDRAIPNLERQTKKLEEEKNSIIIEEEDSLKNYYSLIEQYKTLKKDVRDITF
SSKYCLPFLQPGRLVCIELTRTAEDLPSFSLEDHVTWGVIINFQRVKSSAQDEESKKPED
ANYTIDVLTRCMVSKEGGAKRTTKIIPLKNRGEPLVVSVPISQVYSLSSIRVIISKDLLP
LEARENTLKKVSEVLSRFSKEGVPLLDPEEDMKVQSSSYRKAVRRIEALESLFDKHEVAK
SPLIEQKLQMLHKKQELAAKIKSVKRQMRSSTALAFKDELKTRKRVLRRLGYISNDDVVE
LKGKVACEISSADELTLTELMFSGVFKDIKVEEMVALLSCLVWQEKLKEAQKPREELELL
FVQLQEAARRVAKVQLDCKVEIDVENFTSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEG
SLIRAIRRLEEVLQQLIQAAKSIGESELESKFEEAVNKIKRDIVFAASLYL
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaaataatacacctttgagttcagtgaagaggaaatcaatggaagaaggtgac
ccaagtacaacaatggagtccaattcacctccacaaaaaattcacagagaaaacgatgat
gaaaacaacaatatcaatatcaatgaaaatgatgctaataatatagcttgttttcatgat
gtttcttaccctgaggggtatacgcctccttcgccgtcgtcgtcatcgtcttctaataat
ggaattggaccagctaaggaatttccgttcactcttgacccttttcaagctgaagcgatt
aaatgccttgagcatggagaatctgtcatggtatctgcccatacatcagctggaaagaca
gttgttgcatcatatgctattgctatgtcattgcgcaacaagcaaagggtgatatacact
tcacctatcaaggcactaagcaaccagaaatatcgtgaatttaaagaagagttttcagat
gttgggttgatgacgggagatgttaccattgatcctaatgcttcttgcttggtgatgaca
acagaaatttggcggactatgcaatataaagggtcagaagttacgagagaggtggcatgg
gcaatatttgatgaggttcattatatgcgggatagggagcgtggtgtggtgtgggaagaa
agcatagtaatggctccaaagaactctcgatttgtctttctttcagccactgtgcctaat
gccaaggagtttgcagactgggttgcaaaggtccaccagcagccatgccatattgtttat
acagattaccggccaacaccacttcagcattatatttttccatctggtggtaaaggcttg
tacttggtggttgatgaaaaggcaaaattccgagaagacagtttccagaaagccttgaat
gctcttatccctgctgctgaagttgatagaaagaaaaagtggcagaagggtgtagtggtg
ggtaaagtgggagaagaaagtgatatcttcaagctggtgaaaatgctcatacagcgtcaa
tatgacccgattatactttttagtttcagcaaaagagagtgcgaatttctggccatgcag
atggcaaagatggatttgagtggtgatgatgagaaggtgaatatagaaactatcttctgg
agtgcaatggacatgctttctgatgatgacaagaagctacctcaggtttccaatatgctg
cctctcttaaaacgtggaattggcgttcatcattctggcttgcttccaattctgaaggaa
gttattgaaattctatttcaagaaggtctcattaagtgtttgtttgctacagagaccttc
agcataggtttgaacatgcctgcaaagactgttgtgtttacaaatgtccgtaagtttgat
ggtgacaagttcagatggctatccagtggagaatatatacaaatgagtgggcgtgccggc
cgtcgaggtattgatgagcgtggtatatgtattctgatggtagatgaaaagattgaacct
tcgactgctaaaagtatgctaaaaggaaatgctgatagtttgaacagtgcgtttcatctc
agctacaacatgcttttgaaccaaatacgatgtgaagatggtcaccctgaaaatttactt
cgtaattcattctatcaatttcaatcagatcgggccattcctaatcttgagcggcaaact
aaaaaacttgaagaagaaaaaaactcgatcatcatcgaagaagaagatagcttgaagaac
tattattctttgattgagcagtataaaacattgaaaaaagatgtccgtgatatcactttc
tcctcgaagtactgcttgcctttcttgcagcctggaagacttgtatgcattgagctcaca
aggactgctgaggatctgccttctttctccttggaagatcatgtgacttggggtgtcatt
atcaattttcagcgggtgaagagttctgcacaggacgaagaaagtaaaaagccggaggac
gcaaattatactattgatgttctaacaagatgtatggtgagcaaagaaggcggggcaaag
agaacaacaaaaattattccacttaagaaccgtggggagcctcttgtggtttctgtccct
atttctcaggtctatagcttgagtagcatacgagttatcatatccaaggatcttctgcca
ttggaggctagagaaaacacattgaagaaggtttcagaagttctttccagattctctaag
gaaggagttccattgctagatccggaagaagacatgaaggttcagagtagctcttatcgg
aaggctgtgcgtagaattgaagctttagagagcttatttgacaaacatgaagttgccaag
tcaccattaatcgagcagaaattgcaaatgctacataagaagcaagagctagcagcaaag
attaaatctgtcaaaagacaaatgcgttcttctacggcgttggcgttcaaggatgagctc
aaaaccagaaaacgagttttgaggagacttggttacattagcaatgatgatgttgtggag
ttgaaggggaaggttgcctgtgaaattagtagtgctgatgagttgactttgactgagctt
atgttcagtggtgtctttaaagacataaaagtggaagaaatggtggcccttttgtcttgt
cttgtatggcaggaaaaacttaaagaggcccagaagcctcgggaggagttggagctgctt
tttgtacaattacaggaggcagctagaagggttgccaaggttcaacttgactgcaaggta
gaaatcgacgtcgagaatttcacaagctcattccggccagatatcatggaggcggtgtat
gcttgggccaaaggatccaaattttatgagataatggagatcacccaagtatttgaggga
agcttgattagggctataaggagattagaagaagtcctacaacaacttattcaagcggct
aaatccatcggagaatcagagctagaatccaagtttgaagaagccgtcaataagatcaag
agggatattgttttcgccgcatcactatacttgtag
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