Silene latifolia (white campion): 141643879
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Entry
141643879 CDS
T11116
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141643879
09122 Translation
03013 Nucleocytoplasmic transport
141643879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141643879
03041 Spliceosome [BR:
slaf03041
]
141643879
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
141643879
Spliceosome [BR:
slaf03041
]
Complex C
Other components
EJC/TREX
141643879
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141643879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
141643879
NCBI-ProteinID:
XP_074309318
LinkDB
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Position
2:187848045..187875241
Genome browser
AA seq
1855 aa
AA seq
DB search
MSLPSINYIYVTDDFIRQLKNNNDSPFKFPSPVPLLRFLYELSSSLVNGSLPLQQCKAAL
DAVEFSDASSDDELASCFADIITQMALDLTMSSDNRARLIKLARWAVESSLVPVRLFQER
CEEEFLWECEMVKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCEGSGP
SHSSSTIIGTIKSLIGHFDLDPNRVFDIVLECFEMQPHNNLFLDLIPIFSKSHASQILGF
KFQYHQRMEVQTPVPIGLYRLAALLIKQDFVELDNIYAHLLPKDEEAFENFTTISTRRLD
EATKIGKINLAATGKDLMEDEKPGDVTVDLYGALDMENQAVIELSLELESSQPLGLLTGF
LFVDDWNHAYILFERLSPLTPVANHQICGGLFRLIQNSISSAYDTVRKMHSQITRSGHEA
LDSTDPVTNWPPIFLSKELFEMLASAGPYLYRDTLLLQKVCRVLKAYYLSALELVRKGDG
APITVGGINIVPRLHLREARSRIEEALGTCLLPSLQLVPANPAVGQEIWEVMSLLPYEVR
FRLYGEWEKDDERIPMILAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPLTVIR
TIVQQIEAYRDMITPVVDAFKYLTQMEYDVLEYVVIERLSHTGRSKLKDDGLNLSDWLQY
LASFWGHLCKKYPSMELRGLFQYLINNLKRGQGTELILLQELIQQMANFQYTENMTEDQL
DSMAGGDTLRSLATSFGISRNNKGLIKSTNRLRDSLLPKEEPKLAIPLLLLIAQYRSVVV
INADAPYIKMVCEQFDRCHGILLQYVEFLCSAVSPATAYAELIPSLSDLVHQYHLDPEVA
FLIFRPVMRLFKCESRSVSWPMCGVDKGMAKEAEPIGAGSLVLDVGSKKHGRWSDLLNTI
RTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIVKQHAALHALDELSDNSSSAI
AKRKKEKERIQETLDRLTSELQKHEDHVASVRRRLAREKDNWLSSCPDTLKINMEFLQRC
IFPRCTFSMPDAIYCAKFVHTLHSLGTPYFNTVNHIDVLICKTLHPMICCCTEYEAGRLG
RFLFETLEMAYKWKSAETIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITR
LLIQCLESVEYMEIRNGLILLTKISSVFPVTRKSGINIEKRVAKIKGDEREDLKVLATGV
AAALAARKPSWVSEDEFGMGYIELKPAQTVALRSTSNGSGIGASLTEPIAGRVASEAQAL
DSVNSHRDQTNRVKSVDGRSERPESGPGVSKLKGANGAEAQPSGTSVGISRSLESQKLVE
EISGKTMDDNIAKQTARASETELRAAAKRALPGSGSRPQKTDPKDDSKSAKTAGRASGAS
GVERDYITHVTESRQIGPSNIVSASAINGISGAPKTEGAYGKLDLEVNETRGDGGPTKSS
DLRGSLMDDDADHSDPHRAPHRPVHSPRYDAAGKPIAREQKRASPADDQDRSHKRRKGDS
EMRDMEVTVDRERIIDQKVTDKLGPLDLDKSGEDELVLGRGADKLSDRSKEKSTDKYDRE
HRERSERSRVDDISSAKLRERSMERYGRERSVERVSERRTDRTFDGLNEKSRDDRGKDER
AKLRYNEASSDKSHNEDRFHSKNLPPPPPLPPHVVPQSVNASRRDDDFDRRFGTGRHTQR
LSPMQEEKERRRSEESLSTVQDDPKRRREEELRDRKREERDTLIIKVDDREREKERERER
DREILLKEEMDSAAASKRRKLKREHIPGGEPGEHSPVAPPSSLPIGMSQPYDGRERGDRK
SSIVQRPAYFEEPGIRMHVKEPAGKIARRDIEPIYEREWDDEKRQRAEAKRRHRK
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccttcaatcaactatatctacgtaactgacgatttcattcgtcaattgaaa
aataataatgattcccctttcaaattcccctctccagttcctctccttcgtttcctctat
gaactttcttcatccttggttaatggaagcttgccgttgcagcagtgtaaagcggcgttg
gatgcggttgagttttcggatgcttcttccgatgatgaattagcttcttgttttgctgat
attattacccaaatggctcttgatttgaccatgtcgagtgataatcgcgctcgtttgatt
aaactggcaagatgggctgtggagtcttcgttggtcccagttaggttgtttcaggagcgc
tgtgaggaggaatttctttgggagtgtgaaatggtcaagataaaggctcaagaactaaaa
tctaaagaggtcagagtaaatacccgtctactctaccagcagacgaaatttaatcttcta
cgggaagaaagtgaaggttatgccaagctggtgacccttctttgtgagggttctgggcct
tctcactcatcatcaacaataattggcactattaagtctttaattgggcacttcgatttg
gatccaaatcgtgtgtttgatattgtcttagaatgttttgaaatgcaacctcataataat
cttttcttggacctgatccctattttctcgaagtcgcatgcttctcaaatcctagggttc
aagttccagtaccaccagcgcatggaagttcaaactcctgtaccaatagggttgtacaga
cttgctgctttgcttatcaagcaagattttgttgagctcgataacatatatgcacatttg
ctcccaaaggacgaggaagcatttgagaacttcactacgatatctactaggcgtctcgat
gaggctaccaagatcggtaaaataaatctcgctgcaactggaaaggatcttatggaagat
gaaaaaccaggagatgttaccgtagatctgtacggcgctttagatatggaaaatcaagct
gtcatcgagctttcgttagagctagagagcagccagccattgggcttgctcacgggtttt
ctttttgtggatgattggaatcatgcatatatattatttgagcgtctgtcacctcttact
ccagtcgcgaatcatcaaatttgtggtggattattcaggcttattcaaaattcgatatct
tctgcctatgatactgttcgcaaaatgcattctcaaataaccagaagtggtcacgaagct
ttggactcaacagatcctgtgacgaattggccacctattttcctatctaaagagcttttt
gagatgcttgccagcgctggaccttatctatatcgtgatacgttgttacttcaaaaggtc
tgcagagttttgaaggcttactacctctcagctcttgaactagttaggaagggggacggg
gcacctataactgttggtggcataaatattgtcccccggttgcatcttagagaagctagg
tcgaggatcgaggaagcattaggaacatgtctacttccttctttgcagttggtgcctgca
aatcccgctgttggacaggaaatttgggaagtgatgagtcttcttccctatgaggtgaga
tttcgtctgtatggcgaatgggaaaaggatgatgagcggatacctatgattttggcagct
agacaaacagcaaagctggacacaagacggatcctgaagcggcttgccaaagaaaactta
aaacagcttggccgtatggtcgcaaagcttgctcatgctaacccattaactgttattcgg
acaattgttcaacagatcgaggcctacagggatatgatcacgcctgttgtggatgcattc
aaatatctaacacagatggagtatgatgttctggaatatgtagtgatagagcggttgtca
catacaggtcgttcaaagctaaaagatgatgggcttaacttgtcagattggcttcaatat
ttggcctcattttggggacatttgtgcaagaagtacccgtcaatggagctaaggggtctt
tttcagtatcttataaacaacttgaaaaggggtcaaggaacagaacttattctgctgcag
gagttgatacagcagatggcaaattttcaatatacagaaaatatgacagaggatcagttg
gattccatggcagggggcgatactcttcggtctctggctacatcatttggcattagccga
aacaacaagggattaattaaatctacaaatagactgagagactctctgcttcccaaagaa
gagccaaagctggcaatccctcttttgctacttattgcccaatatcgttcagtggttgtt
atcaatgcagatgcaccttatataaaaatggtgtgtgaacagtttgacagatgccatggt
attcttcttcagtatgtggaattcctttgtagcgcagtcagccccgcaactgcatatgca
gagctaatacccagtcttagcgatcttgtccatcaataccaccttgatcccgaggtagca
ttcttgatatttcggccagtcatgaggctctttaagtgtgaaagcaggtctgtttcatgg
cctatgtgtggtgttgataaaggaatggcaaaagaagcagagccaattggtgctggttca
ttggttttggatgtgggctctaaaaaacatgggagatggtctgatcttcttaatacaatc
agaactatgctaccctcaaaagcatggaatagcctttccccggatctatatgccactttc
tggggtctgacattatatgatctttatgttccaaggaatcgctatgagtctgaaattgtc
aagcagcatgcagctctccatgcgttagatgagctgtctgataattcaagttccgcaatc
gctaagaggaagaaagagaaggagagaattcaagaaaccttggatcgtttgacgagcgag
cttcagaaacatgaggaccatgttgcttctgttcgcaggagactcgctagagaaaaagat
aattggttgagctcttgtcctgatacattgaaaattaacatggagttcctgcagcgttgt
atttttcctcgttgtacattcagcatgcctgatgctatttactgtgccaagtttgtccac
actcttcattcattgggcactccgtattttaacacagtcaatcatattgatgtcttaata
tgcaaaactctacaccccatgatatgctgctgcactgagtatgaggctggtaggctaggc
aggttcttgtttgagacattggaaatggcctacaaatggaagagtgctgagactatttac
gagcgtgaatgtggtaacatgcctgggtttgcagtctattatagatatccaaatagtcag
cgtgtcacatatggccagttcataaaggtgcactggaaatggagtcaaagaatcacacga
ttgctgatacagtgcttggaatctgtggaatatatggaaattcgtaatggtctgatattg
ctaacaaaaatatcaagtgtttttcctgttactagaaagagtgggattaacattgagaaa
cgagttgcaaagatcaaaggtgatgaaagagaagatttaaaggttctagctactggtgtg
gcagctgcactcgctgctagaaagccttcctgggtatcagaagatgaatttgggatggga
tatattgaactaaaacctgcgcagacagtggctttgaggtcaactagtaatggttcagga
attggtgcatctctaactgaacccattgcgggaagagttgccagtgaagctcaagctttg
gattctgtgaattctcatagagaccaaacaaatcgagtgaagtctgttgatggaaggtcg
gagaggccagagagtggtccaggtgttagtaagttgaaaggtgcaaatggggcggaagca
cagccgagtggtacatcagtaggaatatctaggtcgttggagagccaaaaactagtagag
gagatttctggtaagacaatggatgataacattgcgaagcaaacagcaagagcatctgaa
actgagctaagagctgcggctaaacgggccttgcctggatcgggttcaaggcctcaaaaa
acggatcctaaagatgactctaaatcagcaaaaactgctggtagagcaagtggtgcgtct
ggtgttgagagagattatataactcatgttacagaaagtaggcaaatagggccctcaaat
attgtaagcgcttctgctattaatggcatttcaggtgcacctaaaactgagggtgcatat
ggaaaattagatttagaagtcaatgaaacacggggcgatggtggccccacaaagtcctca
gatttgagggggtcattgatggacgatgatgctgatcattctgatccccatcgggcccca
catcgcccagtccattctcctaggtatgatgctgctggcaagcctattgcgagagaacag
aaaagagctagtcctgcagatgaccaggataggtcgcataaacggcgtaagggtgattct
gaaatgagagatatggaggttacagttgatcgggagaggattattgaccaaaaagtaaca
gacaagttaggtccattagatttggataagtcgggggaagatgaactagttttaggccga
ggcgctgataagcttagcgataggtcaaaggagaaaagcactgataagtatgatagagaa
catcgagaaagatcagagcggagtcgtgtagacgatatttcatctgctaaactgagagag
agatcgatggagagatatggaagagagcgttcagttgaaagggtttctgaacggagaact
gatcggactttcgatggcctaaacgagaaatcgagggatgatagaggcaaggatgagaga
gctaaattgcgttacaatgaagcgtctagtgataaatcacataatgaagatcgatttcat
tctaagaatttgccgccgccgccacctttaccacctcacgtggttccacaatctgttaat
gccagtcgacgagatgatgattttgacaggagatttggaactggtagacatactcagagg
ctttctcctatgcaagaagagaaggaacgtaggcggtcagaggaaagcttgtcaacagtt
caagatgatcctaagcgacgtagagaagaggaacttagagatagaaagcgggaagagagg
gatactctgataatcaaggtggatgaccgagaaagggagaaagaacgtgaacgggagagg
gatcgagaaattcttttgaaagaggaaatggattcagctgctgcttcaaagaggaggaaa
cttaaacgagaacatattcctggtggtgaacctggagaacattcccctgttgctccacca
tcttcattgcccattggcatgtctcaaccttatgatggcagagaaagaggagacagaaaa
agttcaattgtgcagcgtccagcttacttcgaggaacctggcataaggatgcacgttaaa
gaaccagctggcaagattgcacgccgtgatattgaaccaatatatgagcgcgaatgggat
gatgagaagaggcagagagctgaagccaaacgaaggcatcggaagtga
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