Silene latifolia (white campion): 141643924
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Entry
141643924 CDS
T11116
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141643924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slaf03021
]
141643924
03036 Chromosome and associated proteins [BR:
slaf03036
]
141643924
Transcription machinery [BR:
slaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
141643924
Coactivators
SAGA/TFTC/STAGA complex
141643924
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
141643924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
DUF3335
Motif
Other DBs
NCBI-GeneID:
141643924
NCBI-ProteinID:
XP_074309423
LinkDB
All DBs
Position
2:188613717..188622398
Genome browser
AA seq
971 aa
AA seq
DB search
MDPSIMKLLEEDEDESMHSGADVEAFTAALNRDIENGAPTTQPSQPETSFSQELNQSSSQ
MYSQWQPSNQNDINANQCQQNKEQLEDQLPSNVGAKEHGTNVETKPDVNSHQAPSSLPMQ
YKAMPLDGQGNQVEQNPAQYSQPSASTHMQISGRAHPQISEQDRMHNPSQLPNTQRLNNN
QPVPEQVGGPSQRQKQIPFGSLLPIILPDLDKDKAMQLQTLYTKLKRNEIPKEGFVRHMR
GIVGDQMLRLAVVKMQAKSQNPSQQQPQQQLRLPPGTVPQNSSQQQQQQLRPPPGIVPQS
MSQQQQQQLRPPPGTVTQNMSQQQQQQLRPPPGIVTQNMSQQQQQPLRPPPGIVTQNMSQ
QQQQPLRPPPGIVTQNMSQQQQQPLRPPPGTVTQFSDPYTFGQLPQQQANQLSGRPAIPV
QGLSKQQQEHLHFSQSSFPMYGGQPFAGTNASSPSTMINQPNDTQIRHVQLQQGFGSAHN
NVPKVERQTSYNDTRGVPGPTMANMPTTAMHHTSVSWQAMTSKDQGVWPPIGYVKQEPIE
QGPDKQPKVSNFQSQGPSLSAQVDQGKGPGTSNDELTERQNSTMAFGSAMRTTNMTTPNS
VPTQMDADTQVGSQNALASSKIATKKPISGQKKPLDSLVSSPPLPGKKQKVSGSFADQSI
EHLNDVTAVSGVNLREEEEQLFSLPKDDSRVSEASRKAVQEEEDRLILQKNPLQKKLAEI
MTKCGLKNLSNDVEKCLSLCVEERLRALISSLIRVSKHRVDSEKSKHSIVVNSDVREQIL
MINQKATEEWEKKQAEADKLRKQNEPDSSGAVDVEKEKEEARNKSLKVNKEEDDKMRTTA
ANVAARAAVGGDDMLSKWQLMAQARQKRDGGPEIASGSQLGRDATLKPLITSTGNVKDTR
GVGKKDHSATLGTPGAMRQGGKYQENTLPPRIAPSISIKDVIAVLEREPQMAKSTLVYRL
YDRSKPHAPTQ
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggacccttctattatgaagctccttgaagaggatgaggatgagtcaatgcactctgga
gcagatgttgaagcatttactgctgctctaaatagggatatagaaaatggtgcacccact
actcagccttctcaaccggagacttctttttctcaagagctcaatcaatcatcaagtcag
atgtactcacaatggcaaccttctaaccaaaatgatatcaatgccaaccaatgccagcag
aacaaggagcagttagaggatcagttaccatcgaacgtcggggcaaaggaacatggtaca
aatgtagagacgaagcctgatgttaatagccatcaggcacctagtagtctccccatgcaa
tataaggccatgccacttgatggtcagggaaatcaagttgaacaaaatcctgcacagtac
tctcagccgtcagcctcaacacacatgcaaatatctggaagagctcatcctcaaatttct
gaacaggataggatgcataatccatctcagttaccaaatacacagagattaaataataat
caaccagttccggagcaggttggcggcccatctcaaaggcaaaaacaaataccttttggc
agtttgcttcctattattctacctgatttagacaaagacaaggccatgcaactgcaaact
ctttacacaaaattgaagaggaatgagatacccaaagaaggttttgttagacatatgaga
ggcattgtgggggaccagatgctaagattggctgtggttaagatgcaagcaaagtcacag
aacccttcacagcagcagccgcaacaacagttgcggctgccgcctggcacggtacctcag
aattcgtcgcagcagcagcaacaacagctgagaccgccacctggcattgttcctcaaagt
atgtcgcagcagcagcaacaacagctgagaccgccacctggcactgtaactcaaaatatg
tcacagcagcagcaacaacagctgagaccgccacctggaattgtaactcagaatatgtca
cagcagcagcagcaacctctgagaccgccacctggaattgtaactcagaatatgtcacag
cagcagcaacaaccgctgagaccgccacctggaattgtaactcagaatatgtcacagcag
cagcaacaaccgctgagaccgccacctggaactgtaactcagttctctgatccatataca
tttgggcagctgcctcagcagcaagcaaaccaactttcaggtcgcccggcaattcctgta
cagggcctttcgaagcagcagcaagagcacttgcatttttctcagagttcatttcctatg
tatggaggtcaaccgtttgctggcacaaacgccagctcaccttccacaatgattaatcaa
cctaatgatacccaaatcaggcatgttcaacttcagcaagggtttggttcagctcataat
aatgttcctaaagtggagaggcagacctcgtataatgataccagaggtgtccctggtccc
accatggccaatatgcctaccaccgcaatgcatcatacttccgtttcttggcaagctatg
acaagcaaagatcagggtgtttggcctcccatcggttatgtgaagcaggagcctattgaa
cagggtcctgataaacagccaaaggtctcaaactttcaatcccaggggcctagcttatca
gcacaggttgatcaaggcaaaggcccagggacttcaaatgatgaactgacagagaggcaa
aattccacaatggcatttggctcagccatgaggacaactaatatgacaaccccaaattct
gttcctacccaaatggatgcagatacgcaggtgggatctcaaaatgcactggcaagttcc
aaaatcgcaactaaaaagcctattagtggtcagaagaagccacttgactcactagtttct
tcaccccctttaccaggtaaaaaacagaaagtttctgggtctttcgcagatcaaagcatt
gaacatcttaatgatgttactgctgttagtggagttaatcttagagaggaagaggagcag
ttattttctctgcccaaagatgatagtagagtttcagaagcatctcgtaaggctgttcaa
gaagaagaagaccggctgattctgcaaaagaatcctctccagaagaagttggctgaaata
atgaccaaatgtggtttgaagaacttaagcaacgacgtggaaaagtgcctctcactatgt
gttgaggaaagattgcgtgcgttgataagcagcttgatcagagtctcgaaacatcgagtt
gattctgagaagtcgaagcacagcattgttgtcaattctgatgttcgagaacagattttg
atgataaaccaaaaagccacagaggagtgggagaaaaagcaagccgaagctgataaacta
agaaaacaaaatgaacctgatagtagtggtgcagttgatgtcgagaaggagaaagaagaa
gcacgcaataagtctcttaaggtaaacaaagaggaagatgacaaaatgcgtacgacagct
gcaaatgttgctgcacgagctgctgtcggaggagatgatatgctatcaaaatggcagctt
atggcacaggcacgccagaaacgcgatggtgggcctgagattgcttctggttctcagttg
ggtagagatgccaccctcaagccattaataacatctactgggaatgtcaaggacacccga
ggagttggaaaaaaagatcattctgctactctgggaacacctggagcaatgagacaagga
ggcaaatatcaagagaacacgctgcctccaaggatagctcccagtatctctatcaaggac
gtgatcgctgtgctcgagagagaaccacaaatggccaagtctactttagtctatcgtctc
tatgaccgatcaaagcctcatgctccaactcagtaa
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