Silene latifolia (white campion): 141644132
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Entry
141644132 CDS
T11116
Name
(RefSeq) uncharacterized protein LOC141644132
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141644132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141644132
03041 Spliceosome [BR:
slaf03041
]
141644132
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141644132
Spliceosome [BR:
slaf03041
]
Complex B
Other components
Prp19-related factors
141644132
Complex C
141644132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
PKI
NRDE-2
Motif
Other DBs
NCBI-GeneID:
141644132
NCBI-ProteinID:
XP_074309695
LinkDB
All DBs
Position
2:193628388..193632936
Genome browser
AA seq
910 aa
AA seq
DB search
MAIMAMDLYPSADDLLYEEEILRNPFSLRLWWRYLVARTDAPFKKRAIIYERALKALPGS
YKLWYAYLRERLELVRNLPINHSQYETLNNTFERALVTMHKMPRIWVMYLQILVNQKWIS
RTRRCFDRALCSLPVTQHERIWDIYLGFVSQKGIPIETSLRVYRRYLTYDPNHIEDFIEF
LVSSERWQEAAERLAGVLNDNGFFSIKGKSKHRLWLELCDLLTKHATEVEGLNVDAIIRG
GIRKFTDEVGRLWTSLADYYIRRRLPEKARDVFEEGMMTVVTVRDFSVIFDAYSQFEESM
LALKMENMDLEESEEEKEGEDDESEEDVRLDFDLSISKFEKKIFKGFWLHDDNDVDMRLA
RLEYLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYEHHNDLANARVIFDKAVQVNYKAVDHLASVWCEWAEMELKHKNFKGS
LDLMRRATAEPSVEVKRRVAADGQELVQMKVHKSLKLWTFYVDLEESLGNLDSTRAVYER
ILDLRIATPQIIINYAMLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYK
SSKLERARELFDNAVETAPAECVKQLFLQYAKLEENYGLAKRAMNVYDRATKAVPANEKL
SMYEIYIARAAEIFGVPQTREIYEQAISSGLPDKDVKAMCMKYAELEKSLGEIDRSRAIY
TYASQFADPRTDPDFWNKWNEFEVQHGNEDTFREMLRIRRTVAASFSQTHFILPDHLKAN
TEKANKAEDGEVGVDEMAALEKQLAPPPVEDVSVKDKSRTVGFVSAGLESQSDVGRKNIN
QEEIELPDESDGEDEDDEQVEISQKDVPDAVFGGLGKKREEPGIGEDGEETNGVQSRLGA
LERMKRRKNS
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcgataatggcgatggatctctacccttcagcagacgacctcttatatgaggaagaa
atcctccgcaatcccttcagcttacggctatggtggcgttatttagtcgcacgcacagac
gcgcctttcaagaagcgcgcaatcatttacgagagagcactcaaagccttacccggaagc
tataaactatggtatgcatatcttcgagaacgattagaattagttcgtaatttgccaatt
aatcattctcagtatgaaaccctaaataatacatttgaaagagcgcttgttacaatgcat
aaaatgccgaggatttgggttatgtatttgcaaatcttagttaatcagaagtggattagt
agaactaggaggtgttttgatagggcgctttgttcgttgccggttacacagcatgaaaga
atttgggatatttacttggggtttgtgagtcaaaaggggattccgattgagacgtcattg
agggtgtataggaggtatttgacctatgacccgaatcatattgaggattttattgagttt
ttggttagttcggagaggtggcaggaggcggctgagaggttggcaggggtgttgaatgat
aacgggtttttctcgattaagggaaaatcgaagcataggctgtggttggagttgtgtgat
ttgttgactaaacatgcaactgaagtggaggggttgaatgttgatgccattattaggggt
ggaattaggaagtttacggatgaggttggtcgattgtggacatctcttgcggattattat
attaggaggaggttaccggagaaggctagggacgtgtttgaggaagggatgatgactgtt
gtaacagttagagattttagcgtgatttttgatgcgtattcacaatttgaggagagtatg
ttggcgttgaaaatggagaatatggatttagaagaaagtgaggaggagaaggagggcgaa
gacgacgagagtgaggaggatgtgaggttggactttgatctttcaatctcaaagttcgag
aagaagattttcaagggcttttggttgcacgatgacaatgacgttgatatgagattggct
aggttggagtatttaatggacagaaggccggagcttgccaatagtgttttactccgacag
aatcctcacaacgtggagcagtggcataggcgagtaaagctctttgagggaaatcctacc
cgacaaattctgacttacacggaggctgtgaggaccgtggacccaatgaaggccgtggga
aagcctcatactttatgggtagcgtttgctaaactttatgagcatcataatgatcttgct
aatgcgagagtcatatttgacaaagctgtgcaagtaaactataaggccgttgatcatttg
gccagtgtatggtgtgagtgggctgagatggagctaaagcacaagaactttaaaggatcc
cttgaccttatgcgtcgtgcgaccgctgagccatctgttgaagttaagaggcgagttgcc
gctgatggtcaggaactcgtgcagatgaaggtgcataagtcattgaagttatggacattt
tatgtagatttggaggaaagccttggcaatttggattccacacgtgctgtgtatgagagg
atattggacttgaggattgccactcctcaaattattataaactatgcaatgcttctggag
gagcacaaatattttgaagatgcttttagggtgtatgaaagaggtgtgaagatttttaaa
tacccacatgtaaaagatatatgggttacctatctgtcaaagtttgtgaagagatataaa
agctctaagttagaacgagctagagagctctttgacaatgctgttgaaacggctcctgca
gagtgtgtgaagcaattgttcctgcaatatgctaagttggaggagaactatggcttagct
aagcgggcaatgaatgtctatgatagggctacaaaagctgttccagctaatgagaagcta
agcatgtacgaaatctacatagcccgtgcagcggaaatatttggagtgccacaaaccagg
gaaatatatgagcaagctatttcatctggtctcccagacaaggatgtgaaggcgatgtgc
atgaagtatgctgagcttgagaagagtcttggagagattgatcgctctcgggctatatac
acttatgcctcgcagttcgcagatcctaggacggatcctgatttttggaacaagtggaat
gaatttgaggttcagcatggaaacgaggatacgttcagagaaatgctccgtattaggaga
actgttgctgcatccttcagtcagacacatttcatccttcctgaccacctgaaggcaaat
actgaaaaggccaacaaggctgaagatggagaagtcggagtagatgaaatggctgctttg
gaaaaacagcttgctcctcctccagttgaagatgtctcggttaaagataagtctaggaca
gttggctttgtgagtgctggactcgagtctcaaagtgatgtcgggaggaaaaatataaac
caggaggaaattgagttacctgacgagagtgacggtgaagacgaagatgatgaacaggtc
gagatttctcaaaaagatgtaccggatgctgtttttggtggcttaggcaagaaacgggag
gagcccggaattggtgaagatggagaggagaccaatggggttcaatctcgtcttggagct
ttggaaagaatgaagcggagaaagaattcttaa
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