Silene latifolia (white campion): 141646781
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Entry
141646781 CDS
T11116
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141646781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
slaf03041
]
141646781
03009 Ribosome biogenesis [BR:
slaf03009
]
141646781
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141646781
Spliceosome [BR:
slaf03041
]
Complex A
U1 snRNP components
U1 related factors
141646781
Complex B
141646781
Ribosome biogenesis [BR:
slaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
141646781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
141646781
NCBI-ProteinID:
XP_074310829
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All DBs
Position
3:3372319..3380289
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AA seq
623 aa
AA seq
DB search
MAANAVAGPRYAPDDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYEKPKPVAPPSNGNSS
RPSSGYVSSSVQVQPSYQEQQRDGGYGNDNDDKYTGAGSDEKSQQPVRDGVTSNGGGGPA
VNHGPADVESGLSAEAYRRRHEISVSGDSVPAPFMTFEATGFPSEVLREATQAGFSAPTP
IQAQSWPIAMQGRDIVAIAKTGSGKTLGYLLPGFMHLRRLHNSSQMGPTVLVLSPTRELA
TQIQAEALKFGRSSRISCTCLYGGAPKGPQLRELERGVDIVVATPGRLNDILEMKKVSLR
QISYLVLDEADRMLDMGFEPQIRKIVNEVPTRRQTLMYTATWPKEVRRIAADLLSNPVQV
NIGSADELVANKSITQHVEVVPYMEKQKRLEQILRSQEPGSKVIVFCATKKMCDMLARNL
NRQFGAAAIHGDKSQGERDDVLNQFRSGRSPLLVATDVAARGLDVKDIRVVVNYDFPTGV
EDYVHRIGRTGRAGATGVAYTFFSDQDSKHASDLVKILEGANQQVPQEVRDMAQRGGGMG
RGRRQWDSGSGGRGGGQGGRSDSGYGGGYGGRYDGGGRGNSFRKSPSPDRQGWGRQRSRS
PERFDQAPSGGKSFHQMMMERSR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaatgctgttgctgggccacgctatgcacctgatgacccgacacttcctaaa
ccatggagggggttggtagatggtaagactgggtatttgtacttttggaatccggaaact
aacgtcacacagtatgagaagcctaagcctgttgctccaccttcaaatgggaactcatca
aggccctcgtctggatatgttagctcttctgtgcaagttcagccatcgtatcaagaacag
cagagagatggtggctatggtaatgataatgacgacaaatatactggtgctggtagtgat
gaaaagagtcaacagcctgtcagagacggagttacttctaacggaggtggtggacctgca
gtcaatcatggaccagcagatgttgaaagtgggttatcagctgaagcttaccgtcgccga
catgagatatctgtttctggagattcagtacccgcaccattcatgacttttgaagctacc
ggtttcccttctgaggttctgagagaggcaacccaggctggcttttctgcccctacgcca
attcaggcacagtcatggccaattgcaatgcaaggtcgggatatagttgcaattgcaaag
acgggttctggaaagaccttggggtatctgctcccaggttttatgcatctaaggcgttta
cacaacagttcacagatggggcccactgtgttagtgttatcaccaacgagagagctggcg
actcagatacaagctgaagctttgaaatttgggaggtcttccagaatttcatgcacgtgt
ttgtatgggggagcccctaaaggccctcaattgagggagctggaaagaggagtggatatt
gtggtagcgactcctggtcgtttgaatgatatactagagatgaagaaagtcagcttgcgt
cagatttcttacttggtgcttgatgaggcagatcgtatgctggacatgggttttgagcct
caaattaggaaaattgtgaatgaggtacctactcgccgccagactctgatgtatactgca
acatggccaaaggaggtccggagaattgctgcggatttgctttcaaatcctgttcaggtc
aacattggcagtgcagatgaacttgtggcaaacaagtctattactcagcacgtggaggtt
gtaccgtacatggagaagcagaaaaggttggagcagatattgagatctcaagaacccgga
tcaaaagtcatagtcttctgtgcaaccaaaaagatgtgtgatatgcttgctcggaacctt
aatcgacaatttggagctgctgcaattcatggtgacaaatcccagggtgaacgtgatgat
gtactaaatcagtttcgaagtggaaggtctcctttgctggttgctacagatgttgcagct
cgtggacttgatgttaaagacatcagggtggtggtcaattatgactttcctacgggggtc
gaggactacgttcatagaatagggaggactggaagagcaggagcaactggagtggcctat
acatttttttcagatcaggatagcaaacatgcttctgatcttgttaagattttggaagga
gcaaatcaacaagttcctcaggaggttcgagatatggctcagcgaggtggtggaatgggt
aggggaagacgtcagtgggactctggatccggtggtcggggtggaggccaaggagggaga
agtgattccggttatggtggcggttatggtggcaggtatgacggtggtggccgtggcaac
agctttcgcaagagcccttctccagatcgccagggttggggccgtcaaaggagccgcagt
cctgaaaggtttgatcaagctccatctggtggcaaaagttttcatcaaatgatgatggag
cgttcccgttga
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