Silene latifolia (white campion): 141647078
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Entry
141647078 CDS
T11116
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141647078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141647078
03036 Chromosome and associated proteins [BR:
slaf03036
]
141647078
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
141647078
Chromosome and associated proteins [BR:
slaf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
141647078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
141647078
NCBI-ProteinID:
XP_074311216
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Position
3:8757886..8785984
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AA seq
1275 aa
AA seq
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MFGSSSPFGQSASTPFGSQSPFGQNNVTNNPFAPKPFGAANPFGSQTGGSVFGSTSTGVF
GQSSSPLSSTPTFGATPTSGFGNTPTFGSQSSSFGGSSTFGGFGTGTQPSPLGSSFQQSQ
PAFSTNLFGASSQPSFGTTTSAFGSSTTPTFGSTSTGGFGATSASAFRSTPSPSFGNTGA
AFGVGSAPAFGSTGAFRSSNNSVFGAGSAPAFGATTSSAFGATSTPTFGPTSTPAFGQPN
SQAFGSSGSAPTFGASTTSAFSLNSSPAFGQSTSTFGNTTFGSTPSPFGTPASSASTPFG
SQSPFGQNNVTNNPFAPKPFGAANPFGSQTGGSVFGSTSTGVFGQSSSPLSSTPTFGATP
TSGFGNTPTFGSQSSSFGGSSTFGGFGTGTQPSPFGSSFQQSQPAFSTNLFGASSQPSFG
TTTSAFGSSTTPTFGSTSTGGFGATSASAFGSTPSPSFGNTGAAFGVGSAPAFGSTGAFG
SSNNSVFGAGSAPAFGATTSSAFGATSTPTFGATSTPAFGQPNSQAFGSSGSAPTFGAST
TSAFSFNSSPAFGQSTSTFGNSTFGSTPSPFGTPASSGVQTTTPTFGSGTFGQSNLGGSR
VAPYQATADTDGPSNQPQGKLESISAMQVYKDKSHEELRWEDYQRGDKGGPNAAGQSSPG
LNFGVPGAAQNPFGSPTLGQSSANPFSTSTPSTQSNIFSKPSPFGGTGLGTSTPTFGSSP
FGSAPAPAPTSNLFGSSPAQTSSPFGTPTPAFSSSSIFGSAISSATTSASIFGATPSQTQ
SPFGTSVFGSQPSPLFQSSSPSLGIGSTFGQSGSLFGSTPSFSSAFNTTSTFPTGGFGNT
SNTTGGAFGQSTLSLASPFQQSQPPQQNSLFNFNNAGQTQAGGASGIFGQSLGQSFGQSG
SGIQNSTPQQPIAITNPFGTLPAMPHMSIGNTGTSPSIQYGISSMPVVDKPTPVRVSSLL
TSRHTSQRRIRLPARKYHPKNDGSRVAFFSEEDEAPSTPKADALFIPRENPRSLIIRPID
QWPKSSMKEASVKVYENGNASVENHNHINGSTGEGNNGVANGNGHHSVKFSQKPTGNNND
DTPNQKGDSYITLSGHRAGEAAIVYEHGADIEATMPKLRHSDYYTEPRIQELAAKERAEP
GYCRHVKDFVVGRHNYGSIKFLGETDVRRLDLESLIQFNNREVIVYLDDSKKPPVGQGLN
KPAEVTLLNIKCYDKKRNQIIEGPKIEKYKEMLKKKAEDQGAEFLSYDPAKGEWKFRVDH
FSKYVFGDDDQWDTD
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgttcggttcaagtagtccttttgggcaatcagctagcacgccttttggatcacagtca
cctttcggacagaacaatgtaacgaataatcctttcgctccaaagccttttggtgctgct
aatcctttcggttcacagacaggaggttccgtctttggcagcacatccactggagtgttt
ggtcagtcatcatcaccactgtcgtcgacaccgacttttggagctactccaacatccgga
tttgggaatacccctacatttgggagtcaatcttcatcttttggtggatcatctacgttt
ggaggttttggaacaggcactcaaccaagtccattaggaagttcatttcaacaatcccag
cctgcgtttagtaccaatttgtttggtgcttcaagccaaccatcatttggtactactact
tcggcttttggatcatcaaccacaccaacatttgggtctactagcacaggaggatttgga
gccactagtgcctctgcttttcgttctacaccaagtccatcttttggaaatacaggagct
gcctttggggtcggaagcgctcctgcctttgggtctacaggagcatttagatcttcaaac
aattctgtcttcggtgcaggcagtgctcctgcttttggagctacaaccagctctgctttt
ggtgccacatcgactccaacctttgggcctactagcactcctgcttttggtcaacctaac
agccaagcttttggttctagtggtagtgctccaacatttggtgcttcaaccacttcagct
tttagtttgaactccagtcctgcgtttggccaatctacgtctacgtttggtaacactact
ttcggatcgacgccatctccttttggtactccggcttcttcagctagcacgccttttgga
tcacagtcacctttcggacagaacaatgtaacgaataatcctttcgctccaaagcctttt
ggtgctgctaatcctttcggttcacagacaggaggttccgtctttggcagcacatccact
ggagtgtttggtcagtcatcatcaccactgtcttcgacaccgacttttggagctactcca
acatccggatttgggaatacccctacatttgggagtcaatcttcatcttttggtggatcg
tctacgtttggaggttttggaacaggcactcaaccaagtccatttggaagttcatttcaa
caatcccagcctgcgtttagtaccaatttgtttggtgcttcaagccaaccatcatttggt
actactacttcggcttttggatcgtcaaccacaccaacatttgggtctactagcacagga
ggatttggagccactagtgcctctgcttttggttctacaccaagtccatcttttggaaat
acaggagctgcctttggggtcggaagcgctcctgccttcgggtctacaggagcatttgga
tcttcaaacaattctgtcttcggtgcaggcagtgctcctgcttttggagctacaaccagc
tctgcttttggtgccacatcgactccaacctttggggctactagcactcctgcttttggt
caacctaacagccaagcttttggttctagtggtagtgctccaacatttggtgcttcaacc
acttcagcttttagttttaactccagtcctgcgtttggccaatctacgtctacgtttggt
aactctactttcggatcgacgccatctccttttggtactccggcttcttcgggagtgcaa
actacaactcctacttttggaagtggcacctttgggcaatctaatttgggaggaagtaga
gtagcaccttatcaagcaactgcagatacagatggccctagtaaccaaccgcaaggaaag
ttggagtctatatcggccatgcaagtttacaaagataaaagccacgaagagctgagatgg
gaagattaccaacgaggtgataaaggtggaccgaatgctgctggtcaatcttctccaggg
ctaaactttggtgtgcctggagcagcgcaaaacccctttggctcgccaactttgggacag
tcgtctgccaacccattttcaacgtctacaccatctacgcaatctaacatattttctaag
ccctcaccgttcggtggcacgggtcttggtacttctaccccaacctttggttcctcgcca
tttggctctgctcctgctcctgctcccacatccaatctcttcggttcgagccctgcacag
acatcctccccttttggaacaccgactcctgcattttcttccagttctatatttggttca
gcaatatcatctgcaaccacctctgcatcaatatttggtgccacaccaagccaaacacaa
tcaccatttggtacttcagtctttgggagtcaaccatcccccctgtttcagtcatcatca
ccttcacttgggataggatctactttcggccaaagtggttccctgtttggatcgactcct
agtttctctagtgcttttaataccacaagtacttttccaacaggtgggtttggaaacaca
tcaaatactacaggcggggcctttggtcaaagcactctctctcttgcatctccttttcaa
cagagtcaacctccacagcagaacagtctttttaacttcaataatgctgggcagactcaa
gcaggtggtgcatcaggcatttttggacagagtcttggacaaagtttcggacagtccggc
tctggaatccagaactcaacacctcaacaaccaattgccatcaccaatccttttgggacc
ctccccgcaatgccccatatgtcaattgggaacactggaacatcaccatcaattcaatat
ggaatttccagcatgcctgttgttgataaacctacccctgtcagggtatcatccttgtta
acatcacggcacacgtctcaaaggcgaatcaggcttccagctagaaaatatcatcccaag
aacgatggttcaagagtggctttcttcagtgaagaagacgaagcaccgagcactccgaag
gcagatgctctttttattcctagggaaaatccaagatccttgattattcggccaatcgat
caatggccaaaatcttcgatgaaagaagcttctgtcaaagtatatgaaaatggtaatgca
tctgtagagaatcacaaccacatcaatggatcgactggtgaagggaacaatggtgttgcc
aatgggaacggacatcactcggttaaattcagtcagaaaccaactggcaataacaatgat
gacacaccaaaccagaaaggagattcctatattactctttcaggacacagagccggcgaa
gcggctatagtatacgagcacggcgctgatattgaggcaactatgccaaaacttcgccat
tccgactactacacggagcctcgaatccaagagctagctgccaaagaaagggcagaacca
gggtactgcaggcatgtgaaggactttgtcgtcggacgacataattatgggagtatcaag
ttccttggagaaactgatgtgagacgactcgacttagagtcccttatccagttcaataac
cgggaagtgatagtctacttggatgacagtaagaaacccccggtcggtcaaggccttaac
aaaccggcagaagttacccttcttaacatcaagtgctatgacaaaaagagaaaccagatc
atagaaggaccgaaaatcgagaaatacaaggagatgcttaagaagaaagcagaggatcaa
ggtgctgagtttttatcttatgatcctgccaaaggagagtggaaattccgagtcgaccat
tttagcaaatatgtgttcggcgatgatgatcagtgggatacagactga
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