Silene latifolia (white campion): 141647194
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Entry
141647194 CDS
T11116
Name
(RefSeq) exosome complex component RRP45B-like
KO
K03678
exosome complex component RRP45
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141647194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141647194
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
141647194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
141647194
NCBI-ProteinID:
XP_074311400
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All DBs
Position
3:11451363..11457426
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AA seq
304 aa
AA seq
DB search
MEERLANSWKMTLNEKQFIETALLSDLRIDGRQPFDYRRLTIKFGREDGSSEVQLGQTHV
MAFVTAQLVQPYKDRPNEGSLAIFTEFSPMADPSFEAGRPGESAVELGRIIDRGLRESRA
IDTESLCVLAGKLVWSLRVDIHILDNGGNLVDAANIAALAALKTFRRPECSLAGEDGQEI
TVHPPEVQEPLPLIVHHLPVSVTFAFFTTDNIVIIDPSYLEEGVMQGKMTVTMNTNGDIC
AIQKGGGVGIMHSVVMQCLRIASVKAADITIKINKAVESYEIERNLRKIKRHPPKALDGG
KSHS
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagattagctaatagttggaagatgactctgaatgagaagcagtttattgag
acagcattgctttcagatcttagaatcgatgggcgccagccttttgattatcgccgctta
accatcaaatttgggcgagaagatggttcatctgaggtgcagcttggacaaactcatgtc
atggcctttgttactgcccaacttgttcagccttacaaggacagaccaaatgaaggatca
cttgctatttttactgagttttcacctatggctgatccatcatttgaggctggccgtcct
ggagagtcggcggtggagttggggcgtatcatagaccgtggtctaagggagagcagggcg
attgatacagaatcactctgtgttcttgctggcaaattagtgtggtcactccgtgttgat
attcacatactggataatggaggaaatctcgtcgatgcagcgaatattgctgctttggct
gccctaaagaccttccgaagacctgaatgtagcctggccggagaagatgggcaagaaata
acagtacatccaccagaggtgcaagagccacttcctctgatagttcaccaccttccggtt
tctgtgacatttgcattcttcactactgacaacattgtgattatagatccttcctacctt
gaagagggggtaatgcaaggaaaaatgaccgtcacaatgaatacaaatggagatatttgt
gctattcaaaagggtggtggagttggcattatgcacagcgttgtgatgcaatgtttaagg
atcgcctctgttaaagctgctgatattactatcaaaatcaacaaagcagttgaatcatat
gaaatagaaaggaatctacgcaagatcaagcgccatcctcccaaagcattagatggtggc
aaatctcattcttga
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