Silene latifolia (white campion): 141647720
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Entry
141647720 CDS
T11116
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141647720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141647720
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141647720
mRNA degradation factors
5'-3' decay
Decapping complex
141647720
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Ortholog
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GFIT
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NCBI-GeneID:
141647720
NCBI-ProteinID:
XP_074312116
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Position
3:complement(71363943..71374296)
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AA seq
829 aa
AA seq
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METARARCHGRPPTSNGSSSLLSAIDSPSFLPLNPQDNSLFDASQYAFFGQNVAEEVELG
GLDVDEDNHSLAGLPSDEYHLFDRDEGHDVGLGSLSDIDDLETTFSKLNRVVSGPRNPGV
IGDRGSGSLSRESSSAAEWSRDGWLDHTVSDVDIALESSRWSSHPNSSFSHSGEFNKPLY
RALSYPEQQLQQHQYLQQDFPSETLSTLKSSSFTSFPPPGGAPQPPLSHRHSLPLNFPSM
NTGLDSTFSAPNISPGISTAHGFGRSMPGVTHSQPRNQWSNHAGLLHGDHSRVLNNVLQQ
QLNHQNSLLYNSPLVSPRQHLFQQGLGQSVPSLAHLSFLQSQLIASHASAPSHLLRKYDS
MYGIAEMRDHQRSKSVRGKHHRFNRQGSDSSVQKEECIQFSSKYMTAEEIGSILKMQHTS
HSNDPYIDDYYHQASIAKKSSGLRLKPHFAPLHLRDVPSRSRNSGSDQHSHQSFDTLRRL
ALSSVRRPRPLLEVEPPSSGCSDGGKERRSLEQEPMFAARIAVEDAFTLLLDVDDIDRVL
RHNPPQDGGSQLRRKRQVLLEALATALQLVDPFGSGGSSVGPGDDIVFMRIVSLPKGCKL
LSKYVELVIVNPGPASELARIVCMGVFRHLRFLYGRLPTDATASEAIVKLAKVVSTCVGG
MDLRGLSACLAAVVCSTEQPPLRPLGSPTGDHASLILKAVLDRATELLNSPNPQASGSWS
VSSLSFWKASFGAFFTLITKYCVSKYDSIMQSMVNRSQPSSDITSSEAARAIRGEMPVEL
LRASLFHTDEHQRRMLMAFAHKSIPFPVTGFNLRDEENIGQINSESVRS
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggagactgctcgagctcgctgccatggccgccctcccacttccaatggatcttcttca
cttctctccgccattgattctccttcttttctcccccttaatccccaagataattcgctt
tttgatgcatcccaatatgcgttctttggtcagaatgttgctgaggaggttgagttggga
gggttagatgttgatgaagacaaccattctcttgctggattgccaagtgatgagtatcat
ttatttgacagagatgagggacatgatgtaggtttaggatctttgtctgatattgatgat
ctggaaactacattctccaagctgaacagagttgtgtcaggaccaaggaatcccggggtt
attggtgatagaggatctgggtcattgtcaagagaaagttcatctgctgcagaatggtca
cgggatggttggttagaccatactgtctcagatgtggatattgctttagaaagttcaaga
tggtcatctcatccaaatagctctttcagtcattctggagaatttaataaacctttgtac
agagcattgtcttaccccgagcagcagctacaacaacaccagtaccttcaacaagacttt
ccaagtgaaacgctgtcaacattgaagtcatcgtctttcacttctttccctcctccaggt
ggcgcacctcaacctcctttgtctcatcgccattcacttcctttgaattttccttccatg
aatactggtctcgactcaactttctcagcaccaaatatatctcctggaatatccactgct
catggatttggtcggagcatgccaggtgtcacacacagtcaacctcgaaaccagtggagc
aatcatgctggcctattgcacggtgatcattctagggttcttaacaatgtactgcaacaa
cagttaaatcatcagaacagtttgctgtataattctcctctggtgtccccccggcaacac
ttgtttcaacaaggactgggtcagtcagtaccgtcattagcacatttatcattcttgcag
tcccagctcattgctagccatgcttcggcaccttctcatcttttgagaaagtacgactcc
atgtatggcattgccgagatgagggatcatcaaagatctaagtcggtccgcggcaagcat
catcgtttcaatcgacaagggtccgactcttctgtccagaaggaagaatgcattcagttc
agctctaagtatatgactgctgaggagattggtagtatcttaaaaatgcaacatacttct
cacagcaacgacccctacatagatgattactaccaccaagcttctattgctaaaaagtct
tcaggattgaggctaaagcctcattttgctcccttgcatttgcgggacgtaccttctcgc
tcacgtaatagtggttctgatcagcacagccaccagtcgtttgatactttaagacggctt
gccttgtcatcagtccgtaggccccgcccacttcttgaagttgagcctccatcctcagga
tgtagtgatggtggcaaagaacggaggtcacttgagcaagaaccgatgtttgctgccaga
attgctgttgaggatgcttttacccttcttcttgatgtggatgatattgaccgtgttctt
cgtcataatccaccccaagatggtgggtctcagcttaggcggaagaggcaggtcttactc
gaagctttggcgacagcccttcagcttgttgacccgttcggcagcggggggagttcagtt
ggtccgggggatgatattgtattcatgcgcattgtttctcttccaaagggctgcaaactt
ctctctaagtatgttgagcttgtcatagtcaacccgggacctgctagtgagttggctcga
attgtctgcatgggtgttttccgccatttaaggtttttgtatggtcgtcttccaactgac
gccacagcttctgaggctatagtcaagcttgccaaggtcgtttcaacttgtgtcggtggc
atggatctccgtggtctaagtgcttgtcttgccgctgttgtttgttctactgaacagcct
ccattacgcccacttggaagccccactggggatcacgcctcgttaattttgaaggctgta
cttgatagggccaccgaactcctaaacagtcctaatcctcaagcctctggaagttggagt
gtttctagccttagcttctggaaggcttcatttggcgctttctttactttgattaccaag
tactgtgtgagtaaatatgactcgatcatgcagtcaatggtaaaccggtcccagccgagt
tcagatatcactagctcagaagcagcaagggctatacgaggggagatgcccgttgagctt
ttacgtgcaagtctctttcacaccgatgaacatcaaaggaggatgttgatggcctttgct
cacaaatctattccatttcctgtcactggatttaatcttcgtgatgaagaaaacattgga
caaattaattcagaatcggtcagaagttga
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