Silene latifolia (white campion): 141647804
Help
Entry
141647804 CDS
T11116
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141647804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141647804
03012 Translation factors [BR:
slaf03012
]
141647804
Enzymes [BR:
slaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141647804
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141647804
Translation factors [BR:
slaf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
141647804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
NACHT
AAA_16
ATPase
AAA_11
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
141647804
NCBI-ProteinID:
XP_074312238
LinkDB
All DBs
Position
3:complement(102390092..102414895)
Genome browser
AA seq
1179 aa
AA seq
DB search
MTTSSLFFRTTTTHLAMSLRHCRTLYTFRPRPPFSLPQFAKPNPLLAPPPFRSFTRLSAA
ALENAKLSSRQSNLKSAPWFQQPKDVGRFAYDDYSDNDSDKDCDSGHQRGSSTLDNLDEW
KWKLTMLLRNQDEQEVVSKDRKDRRDFEQLSTMATRMGLHSRQYSKVIVFSKVPLPNYRH
DLDDKRPQREVVLPFNLQKDVDILLRRHLAHKTIKGALPNSSVLNSTVSLGNHEASYRIS
QPSVKMSAGKERILRVKSEQLQKRQQDWQNSPEGQKMTEFRRSLPAHKERDALLKAVSEN
QVVVVSGETGCGKTTQLPQYILESEIEASRGASCSIICTQPRRISAMSVSERVAAERGED
LGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDREIGGVTHVIVDEIHERGMNEDFL
LIVLKDLLPRRPDLRLILMSATMNAELFSSYFGGAPMLHIPGFTYPVRAHFLENILETTQ
YRLTPFNQIDDYGREKVWKMQKQTQRKRKSQIASAVEESVEGADLVGYSHRTQDSLSCWN
PDSIGFNLIEHVLCHICKNERPGAILVFMTGWEDINSLKDQLQAHPLLGDPSKVLVLACY
GSMASSEQRLIFDRPPDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPC
LLPTWISKAAARQRKGRAGRVQPGECYHLYPRYVYDAFIDYQLPELLRTPLQSLCLQIKS
LQLGSIADFLSKALEAPEALSVQNAIDYLKTIGALDENENLTVLGQNLSMLPVEPKLGKM
LILGAIFKCVDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSAREFSDHLALVRAYEG
WKDAEKRQSGHEYCWTNFLSLQTLKAIDSLRRQFFSLLNDTGLVDPEKDMSNKWSHDEHL
IRAIICAGLFPGVCSVVNKEKSIMLKTMEDGQVLLNLNSVNAQEPRIPYPWLVFNEKMKV
NAVFLRDSTAVSDSALLLFGGRISRGGVDGHLKMLGGYLEFFMKPDLSDTYLSLKRELDE
LVHSKLADPKLDGHSFIDLLSAVRMLIAEDRCEGRFVYNRQLPTASKKTTKATNAEANTK
DSGIDNTKNQLQTLLARAGHGNPVYKTRQLKNNQFRSTVTFNGLEFVGQSCNNKKQAEKD
AAGEALQWLMGDTPSFQSDIAHVSMKGRSKVWNTYRARS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgactacctcgtccctattcttccgcaccactaccactcacctcgccatgtctcttaga
cattgcagaaccctctataccttccgccctcgccctcctttttctctccctcaattcgcc
aaacctaaccccctcctcgcacccccgccttttcgatcatttactcgcttgtcggccgcc
gctttggaaaatgctaagctctcctccaggcaaagcaatctgaaatcagctccttggttc
cagcagcccaaggacgttgggcgcttcgcttatgatgattattcagataatgattctgat
aaagattgcgattccggtcaccaaaggggatcttcaacccttgacaatcttgatgagtgg
aaatggaaattgactatgcttcttcgcaaccaagatgaacaagaagtggtctctaaagat
agaaaggataggcgtgattttgagcaactttctaccatggcaactagaatgggtcttcat
agccgacaatattcaaaagtgatcgtgtttagtaaagttcccttaccaaattatcgccat
gatttggacgacaagcgcccacaacgggaggttgtacttccatttaatttacaaaaggat
gtcgatattcttctaaggaggcaccttgctcacaaaaccatcaagggggctttaccaaac
tcttctgttctaaatagcactgtgtctctgggtaaccatgaagcgtcatacagaatttct
cagccttctgtaaagatgagtgcgggaaaggagagaatcctgcgggtgaaaagtgagcag
ctgcagaaacggcagcaagattggcagaattcaccagaaggccagaagatgacagagttt
cgaagaagtctacctgcacacaaagaaagagatgctctgctgaaagccgtctcagagaat
caggtagtagttgtctctggagaaactggttgtggtaagacaactcaacttcctcaatac
attttagagtctgaaattgaagcttctcgtggagccagttgtagcattatatgtactcag
ccgagaagaatatctgctatgtctgtttcggagagggttgctgcagaacggggtgaagat
ctgggtgaatctgttggctacaaagtaaggttagaggggatgaaagggagggacacacgc
ctgttattctgtactactgggattttgttgagaaggctgcttgttgacagggaaatagga
ggcgtgactcatgttatcgttgacgaaattcatgaacggggcatgaatgaagattttctt
cttattgtcttaaaagatctactacctcgacgacctgatttgaggttgattttgatgagt
gctactatgaatgctgaattgttctcctcctattttggtggagctcctatgctacatatt
cctggttttacatatcctgttcgagctcattttttggagaatatcttggaaactactcaa
tataggttgacccctttcaatcagattgatgattatgggcgagaaaaagtatggaaaatg
cagaaacaaactcaaagaaagaggaaaagccaaatcgcttctgcagtggaggagtcagta
gaaggcgctgatctcgttgggtatagtcatcgtactcaagattctttgtcctgttggaat
cctgactcaataggttttaatctcattgagcatgtgctctgccatatatgcaaaaatgag
aggcctggggccattttagtttttatgactggttgggaagacattaattctttgaaggat
caactccaagctcatcctttacttggagacccaagcaaagtattggtgctagcatgttat
ggttccatggctagttctgaacagaggctgatatttgataggcctcctgatggagtaaga
aagatagtacttgcaaccaacatggcagagacaagtatcactataaatgatgtggtcttt
gttgttgattgtggtaaagcaaaagagacatcatatgatgccttgaacaatactccttgt
ttgctaccaacgtggatatctaaggcggctgctcggcagagaaaaggccgagcaggtcgt
gttcaacctggagaatgctatcatctttacccacgttatgtttatgatgctttcatcgac
tatcagcttccagaactattacggacacccctgcagtctctttgtcttcaaataaaaagc
ttacagcttggtagtattgccgactttttatcaaaggctttggaagcaccagaggcatta
tcggttcaaaatgccattgattatttgaagactattggagctttggatgaaaatgaaaat
ctaactgttcttggtcaaaatttgtccatgcttcctgtggagcccaaacttgggaagatg
ctcatattgggggctatattcaaatgtgtagatccgataatgactgtcgttgctggctta
agtgtcagagacccattcctgatgccatttgacaagaaggatcttgctgagtcagctaaa
gcccaattttctgctcgtgagttcagtgatcatcttgcccttgttcgtgcatatgaagga
tggaaagatgctgaaaagcgtcaatctggtcacgagtattgttggacaaattttctctct
cttcagaccttaaaagccattgattccttgagaaggcagttcttttctttgctcaatgat
actggtcttgttgatcctgagaaggacatgtccaataaatggagtcatgatgagcatctt
attcgagcaatcatatgcgctggtctattccctggtgtttgctcagttgtgaataaagag
aagtcaataatgcttaaaacaatggaggatggacaggttcttttgaatttgaattcagta
aatgcacaggaacctagaataccttatccatggcttgtcttcaatgagaagatgaaagtc
aatgcagtcttccttagggattcaacggctgtgtcagattcggcgttgttactttttgga
ggaagaatttcgaggggcggagtggatgggcacctgaaaatgttgggaggatacttggaa
ttcttcatgaaacccgacttatcagacacttatcttagtctgaagagggagttggatgag
ctagttcatagcaagctcgcggaccccaaattggacggccacagttttattgatctcctc
tctgcagtaagaatgctaattgcagaagaccgttgtgagggtagatttgtgtataatcgc
caactaccaacagcctcaaaaaaaacaacaaaggcaaccaacgcagaggctaatactaaa
gacagtggtattgataatacaaagaatcaattgcaaactttgcttgctagagcagggcat
ggaaatcctgtctataagaccagacagctgaaaaataaccaatttcgttccactgtaacg
ttcaatggtttggaatttgtgggacaatcctgtaataacaagaagcaggcagaaaaagat
gcagccggggaagcgttacaatggctgatgggcgataccccttcattccagagcgacatt
gctcatgtatccatgaagggtcggagcaaggtttggaatacatatagggctagatcctaa
DBGET
integrated database retrieval system
