Silene latifolia (white campion): 141648411
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Entry
141648411 CDS
T11116
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03015
mRNA surveillance pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141648411
09123 Folding, sorting and degradation
03018 RNA degradation
141648411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141648411
03041 Spliceosome [BR:
slaf03041
]
141648411
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141648411
mRNA cycle factors
Stress granule specific factors
141648411
Spliceosome [BR:
slaf03041
]
Complex C
Other components
Complex C specific factors
141648411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_Nup35
RRM_7
RRM_3
YflT
RBD_DGKtheta
SET_assoc
PABC_AtC3H46
RRM_MARF1
HobA
DUF134
Motif
Other DBs
NCBI-GeneID:
141648411
NCBI-ProteinID:
XP_074313165
LinkDB
All DBs
Position
3:complement(148745773..148752911)
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AA seq
651 aa
AA seq
DB search
MAQIQQIPANGAVAVGGSGAGVAALVTTSLYVGDLEFNVTDSQIYDLFSQLGQVVSVRVC
RDLTTRRSLGYGYVNFANPQDAARAIELLNFTPLNSKPIRIMYSHRDPSSRKSGTGNIFI
KNLDKAIDNKGLYDTFASFGTILSCKVATDFSGQSKGYGFVQYEGEESAQKAIEKLNGML
LNDKQVYVGPFVRRQERESTVDKTKFTNVFVKNLAETATDEELAKTFGQFGKITSAVVMR
DIDGKSKCFGFVNYENSDDAAKAVDDLNGQKFDDKEWYVGRAQKKSEREAELKQRFEQSL
KEAVDKYQGTNLYIKNLDDSINDEKLKELFSQYGTISSCKVMRDPTGVSKGSGFVAFSTP
EEASRALMEMNGKMIVSKPLYVALAQRKEDRRARLQAQFSQMRPVAIPPSVGPRMPIYPP
GAAGLGQQIYYGQGPPAMMQHQPGFGYQHQLIPGIRGGAPVPNFFMPMVQQGQQGQRPGG
RRTGGAPGQQNQQPMPIMQQQILPRGRYRYPPARGLPDAPISGVAGGVLPNAQYDIGGLP
MRDAALSPAVPVGTLATMLANATPDQQRVLLGENLYPQVEQLEPEMAAKVTGMLLEMDQP
EVLHLLESPDALKSKVAEAMDVLRNVAHQQSTPSNNTADQLAGLSLTDNLS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaattcaacaaattccggcgaacggtgcggtggcggtaggtggaagtggcgct
ggagtggcggcgttggttacgacgtcgttgtatgtcggagatttggagtttaatgtgact
gattcacagatatatgatctgtttagtcaattgggtcaggtggtttctgttagggtttgt
agggatttgactacgcggcgttcgcttggttatggttatgtcaattttgccaatcctcaa
gatgctgcaagagccatagagctgctgaattttactcctctcaacagcaagcctatcagg
attatgtactctcatcgtgatcctagttctcgtaaaagcggtactggaaacatctttatc
aagaacttggataaggctattgacaacaaaggattgtatgatacatttgcttcgtttggg
accatcctttcatgtaaggttgctactgatttttctgggcagtcgaaaggatatggcttt
gtgcagtatgagggtgaggagtctgcccaaaaggcaatagagaagttgaatggaatgctg
ttgaatgacaaacaagtgtatgtgggcccttttgtgcgcaggcaagaaagagaaagcaca
gttgataaaactaagtttaccaatgtgtttgttaagaatcttgctgaaacagcgaccgat
gaagagttggcaaaaacttttggtcaatttgggaaaatcactagtgctgttgttatgcgt
gacatagatgggaaatcaaagtgctttggatttgtgaactatgaaaattcagatgatgct
gctaaggctgttgatgatctgaatggccagaagttcgatgataaggagtggtatgttggc
agggctcagaagaagtctgaaagggaagctgagttgaagcaacgatttgagcagagtctg
aaagaggcagtggacaaatatcaaggcactaatctttatattaaaaatttggatgatagc
attaatgatgagaagctcaaagagttattttctcaatatggcacgatcagttcttgcaag
gttatgcgtgaccctactggtgtaagcaaaggatcaggctttgttgctttttcgactcct
gaagaggcatctcgagctctaatggagatgaatggcaagatgattgttagcaaacctctt
tatgttgcacttgcacaacgtaaggaagatcggagggctaggttacaggcccagttctct
caaatgcgccctgttgcaatcccaccatcggttggtcctagaatgccaatctatcctcct
ggtgctgcagggcttggacagcagatatattatggccaaggtccacctgctatgatgcaa
caccagcctggatttggatatcagcatcaactgatccctggcataaggggtggcgctcct
gttccaaatttcttcatgccaatggttcagcaggggcagcaagggcaacgtcctggtggc
agacgtaccggtggtgctcccgggcaacaaaaccagcagcccatgcctattatgcagcaa
cagatactaccaaggggacgttatcgctaccctccagcacgtggtctaccagatgctccc
atctcaggtgtcgcaggaggtgtgctccccaatgctcagtatgatattggtggcctgcca
atgcgtgatgctgcattatctcccgctgttcctgttggcactttggccaccatgctggct
aatgccactcctgatcaacagcgagtgctattgggagagaacctgtatccacaggtggag
caactggagccagaaatggcagcaaaggtgacgggaatgctgctagagatggaccaaccc
gaggtactgcatttactggaatctcccgatgcattgaagtccaaggttgccgaggctatg
gatgtcttgcggaatgtggctcaccagcagtcgactcctagcaacaacactgctgatcaa
cttgctggcttgtcacttactgacaacctttcttga
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