Silene latifolia (white campion): 141651306
Help
Entry
141651306 CDS
T11116
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
slaf Silene latifolia (white campion)
Pathway
slaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141651306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slaf03019
]
141651306
Messenger RNA biogenesis [BR:
slaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
141651306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
141651306
NCBI-ProteinID:
XP_074315126
LinkDB
All DBs
Position
4:30032131..30033504
Genome browser
AA seq
457 aa
AA seq
DB search
MTIPFHVPNLSKPQIEYNFHFHIDNLKPFSHTLLPVSRDGSRPIHPVEVFDPLDFITCPD
SEFDSIISPPLPMESTPLKLVDTVEDLGYLASKLSRVDVFAVDLEHNSYRSYQGMTCLMQ
ISTRFEDFIVDTLKLRQHMGEYLRDIFMDPTKKKVIHGSDNDIMWLQRDFSIYVVNLFDT
MRSSQVLQLERNSLAFLLKYYCGIESNKEYQSSDWRIRPLPVDMLKYAREDTHYLLFIYD
SMRKELGSIGSDPLMIEVYKRSYDVCKRLYCVEVFDRETSYLSLYGLSDACLDEEQLGLV
AGLYEWRDKVSRKEDESCWYVLPNKMILEIAKRKPINKHELLEIVGYSKEYVLRDVDFII
DFIWRSTQVNLHKFKVVARLLKQKVNPSVIVSTIQGWRKIRAREQHVFPASMPRLQYANS
APLAQLFSYAARRPCVYPYRVPSVAAYVNAPFVVHCL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgactattccgttccatgttcccaatttatcaaaaccccaaattgaatacaatttccat
ttccatattgataatcttaagcccttttctcacactcttctacccgtttcccgtgacggg
tcaagacccatccatcctgtcgaagttttcgaccctcttgatttcattacttgccccgat
tctgaattcgactcgattattagcccaccattgcctatggagtctactcctttgaagctc
gttgataccgtggaagacttgggttacttggcctccaagttgagtcgagttgatgtgttt
gcggtggatttggaacataattcatatcgttcttaccaaggtatgacttgcctaatgcaa
atttcgacccggtttgaggattttattgtggacacactaaaactccgacaacatatgggt
gaatacttgcgggacatatttatggacccgactaagaagaaggtgatacatgggtccgat
aacgatattatgtggttacaacgtgattttagtatttatgtagtgaatctatttgataca
atgagatcatcacaagttttacaattggaaaggaattcacttgcgttcttacttaagtac
tattgtggtattgagtctaataaggagtatcaatcgtcggattggcgtatccgacccctt
cccgtcgacatgttaaaatacgctagagaagacacacattatctcttgttcatatatgat
tcgatgaggaaggaactaggttcgattgggtccgacccgctgatgatagaggtttacaag
agaagctacgatgtttgtaagagattgtattgtgtggaggtctttgatagggagacatca
tacttgtctttgtacgggttgtcggatgcgtgtctcgacgaggaacaattggggctcgta
gcgggtttgtatgaatggagggataaagtgagtaggaaggaggatgagagttgttggtat
gttctgccaaataagatgatcttggagattgctaaaagaaagccaattaataagcatgag
ttgctagagattgtgggatacagtaaggagtacgttttaagggatgttgactttattatt
gactttatatggaggtcaactcaggtcaatcttcataagtttaaggttgtagcaaggctt
cttaaacaaaaagtcaatccaagtgtaattgtttctactattcaagggtggaggaagata
cgagcacgggaacaacatgtctttccggcatccatgcctcggcttcaatatgctaattct
gctcctctggctcaactattctcttatgctgctcgtcgcccttgtgtgtatccgtatcga
gttccctctgttgctgcttatgtaaatgccccatttgtggttcactgcttataa
DBGET
integrated database retrieval system
